Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi351g00043 ATGGCTTCGAGATATGATTTTATTAAGGATGTTAATGGTGGATCTGAATATAAGATATGGAGGCTGAAAGTAAGGGTTATCCGTTTATGGAGATTTGCTAACTTTCAGGAAAACAACAACAGTAATGTTAAACCAATGATAGAGATGGTGGTTCTTGATGAGCAGGGTGGCAGGATTCAATGCACTGTGAAGAGTTTCCATGTTTATCTTTTTGAACAGAATTTGGTAGAGGATAATGTGTACATGATATCTAATCTCAATGTTGCTCTGAATTCTGCGAAGTTTAAACCCACTTCACATGAATTCAGAATGTTTTTTAAGAGGGAAACTGAGGTTCGTTGGGTTGAGGATTCCACCATTCCGGTAAATGCTTTTTGTTTTGTTCCATACAATGATATTCTCAATGAAAGTAATGAAGAACGTCATTTAGTTGATGTTGTTGGTCTTCTTTCTGCCAAAGGAGACCTTATTGAGTTTAAAAGAAATGGGAAAGTTTGTAACTATTTGGTTATTGAGCTCGATAATCTTGAGGGTGGTCCAAAGCTGAGATGCACTTTGTGGGAAGAATTTGCTCATCAACTTCTTAGGCAGTTGGATAAGGATACCTCTGGTATCCATGTTATTGTGTTGCAATTTGCTAAAATGAAATATTTCAAAGTTCCAGAGGTTGATTCATTGAAGGCCATTCTCCAAACATCTGATGAAAATTATAGTCAGCCTGTGACTCAACTGCCTAGCCATGTTACATTGACTGCTGAAGAAGAGTTTCTTAACAGATTAGAATACAAGAAAATTGCTGAACTTAAGGATGTTAATCAGTCTGGGGTTTATTCAACCGTTGGCACTATCAAAGAGATTGGATCAGAGTACAATTGGTGTTATCGTGGGTGCAAAAAGTGTTCATATGGGATGAAAATTGATGGAAATATGTTCTATTGTAAGAATTGTAACATTCACTATTCAACGTTTGTTACGAGGTATTCTATTCAGGTTAGGGTGCTTGATGAAACAGATTCTGCTTCTTTCATGCTTTTTGAAAAAGAGGCTGCTAACTTCCTCGATTTGTCAGCTTCTGAACTTCGATTGGCTTATATCGCAAGGGGTGGTGATAAGAATTGTCACCCAGAAGAAATTGATGCATTTAAGGAAAATAAATGTCTTTTTAAAGTCAATGTTAAGATCAAGGGTTTAGATTCTATTGTTCCTTATGTCTTAAATGTCCAGAGGTTATGTTGTGATGAAGATTTAATTGCTGCTTTTATAAAGAAGCATAAGCGAGAAGATGTTGTTTTAATGTCTGAAAATTCAGAACTCCTTACTCAAATTACTGACTCAAATGATGTTTTAAAGGAGAATAACTCTATGTTTGTTGATAATTCTGAAAACAATTTCTTATCTCCAAAATCAAAATCTACTGATGATGGTGTCATGACATCAAAAGAAGTCTCTGCTGGTGTTGGTGAGGTTGCTGCTTTGAATGATCTGGGTGTTGACAAGTTCATAACTCCTGTCAAAAGTTGTGAAGCTAAAGAGTTTTCTTCCAAAAATGTTGTTCCTCTTGCTGAAGATGTTGAGATGTCCTCAAATAAAATCCGGAAGATTATCAAGCAGGAGAAAATTGATTGA 1626 0.3579 MASRYDFIKDVNGGSEYKIWRLKVRVIRLWRFANFQENNNSNVKPMIEMVVLDEQGGRIQCTVKSFHVYLFEQNLVEDNVYMISNLNVALNSAKFKPTSHEFRMFFKRETEVRWVEDSTIPVNAFCFVPYNDILNESNEERHLVDVVGLLSAKGDLIEFKRNGKVCNYLVIELDNLEGGPKLRCTLWEEFAHQLLRQLDKDTSGIHVIVLQFAKMKYFKVPEVDSLKAILQTSDENYSQPVTQLPSHVTLTAEEEFLNRLEYKKIAELKDVNQSGVYSTVGTIKEIGSEYNWCYRGCKKCSYGMKIDGNMFYCKNCNIHYSTFVTRYSIQVRVLDETDSASFMLFEKEAANFLDLSASELRLAYIARGGDKNCHPEEIDAFKENKCLFKVNVKIKGLDSIVPYVLNVQRLCCDEDLIAAFIKKHKREDVVLMSENSELLTQITDSNDVLKENNSMFVDNSENNFLSPKSKSTDDGVMTSKEVSAGVGEVAALNDLGVDKFITPVKSCEAKEFSSKNVVPLAEDVEMSSNKIRKIIKQEKID 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi351g00043 541 CDD RPA1_DBD_C 265 393 IPR047192 -
Sebi351g00043 541 Gene3D - 119 239 IPR012340 -
Sebi351g00043 541 PANTHER OS03G0429900 PROTEIN 20 446 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi351g00043 541 SUPERFAMILY Nucleic acid-binding proteins 127 219 IPR012340 -
Sebi351g00043 541 Pfam Replication factor-A C terminal domain 277 394 IPR013955 -
Sebi351g00043 541 Pfam Domain of unknown function DUF223 48 139 IPR003871 -
Sebi351g00043 541 Gene3D - 251 411 IPR012340 -
Sebi351g00043 541 SUPERFAMILY Nucleic acid-binding proteins 7 117 IPR012340 -
Sebi351g00043 541 CDD RPA1_DBD_A_like 21 112 - -
Sebi351g00043 541 Gene3D - 7 118 IPR012340 -
Sebi351g00043 541 SUPERFAMILY Nucleic acid-binding proteins 261 400 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi351g00043 Sebi-Chr351 897783 900332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi351g00043 20 360 Core DNA Replication Machinery Family AT2G06510 21.984 1.24e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi351g00043 - - adu:107477146 399.823