Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi351g00019 ATGGCGACAACAAACCGTTCCTCCGAGGACGCTGCCGATCCGACGCCGTTCATCGGCAGTTCCTCCGACGAGTCGAACTCCGGGAGACGGCTCATCCGCACGCCGAGTCTCCGGCAGGCTGCGCGGTTCCTGAGGCAGGCGAGTGGGCGGAGGCTGATGCGCGAGCCGTCGATGGTGGTGAGAGAGACGGCGGCGGAGCAATTGGAAGAGAGGCAGAGCGATTGGGCCTATTCGAAGCCTGTGGTGGTGCTTGATATTCTCTGGAACTTCGCCTTCGTTGTTGCGGCCGTTACGGTGTTAATTTTGAGTCGGAGTGAGTCTCCCAGCACGCCTCTTAGGTTGTGGATTGTAGGGTACGCTCTGCAGTGCATCGTTCACGTGGCTTGCGTCTGCGTCGAGTATCGGAGACGGATGCGGAGAAGGGAACAGTCTAACGCCAACACCGTTGGGGTTGGAGGCAGTGGGGATTTGAGCTCTGGTTCAATGGATGGTTCTGGGCATTATGTGAATTTGGCGCAATTCGAGGATAATAATGGTACAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTTATTGGATTCTATTGGGTATCTGCTGATGGTCAAGCTTTGGTCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCATGCATCATTGGCATTGCTGTTTGCTGCTGTCTTCCGTGTATCATTGCACTTCTGTATGCAGTTGCAGACCAGGAAGGGGCAACAAAAGAAGACCTTGAGCAGTTGTCAAAATTCAAATTCCAAAGAAAAAGTAATGAGAAACTTGCTGGTAGTACACAAGGACCTGTTGGAGGAATAATGACTGAATGCCATACTGATACTCCAATTGAACATGTGCTTTCTGATGAGGATGCGGAATGTTGTATCTGCCTTTCTGCTTATGAAGATGGGGTTGAACTGAGACAACTTCCTTGCGGTCACCATTTTCACTGTACCTGCGTGGACAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAATATAACATCTTGAAAAGCAGCAGCCATGGTCAAGAGGAAGTTTAG 1131 0.4951 MATTNRSSEDAADPTPFIGSSSDESNSGRRLIRTPSLRQAARFLRQASGRRLMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNFAFVVAAVTVLILSRSESPSTPLRLWIVGYALQCIVHVACVCVEYRRRMRRREQSNANTVGVGGSGDLSSGSMDGSGHYVNLAQFEDNNGTSMAKHLESANTMFSFIWWVIGFYWVSADGQALVQDSPQLYWLCIVFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDLEQLSKFKFQRKSNEKLAGSTQGPVGGIMTECHTDTPIEHVLSDEDAECCICLSAYEDGVELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSSSHGQEEV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi351g00019 376 CDD RING-H2_RNF6-like 320 362 - -
Sebi351g00019 376 SMART ring_2 321 361 IPR001841 -
Sebi351g00019 376 MobiDBLite consensus disorder prediction 1 31 - -
Sebi351g00019 376 PANTHER TARGET OF ERK KINASE MPK-1 48 367 - -
Sebi351g00019 376 FunFam E3 ubiquitin-protein ligase At1g12760 307 372 - -
Sebi351g00019 376 SUPERFAMILY RING/U-box 310 368 - -
Sebi351g00019 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 375 IPR013083 -
Sebi351g00019 376 Pfam Ring finger domain 320 362 IPR001841 -
Sebi351g00019 376 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi351g00019 Sebi-Chr351 286986 291005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi351g00019 15 371 C3H Transcription Factor Family AT1G68070 49.587 1.50e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi351g00019 - - gmx:100779757 622.083