Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi350g00041 ATGGCTACAGTAGAGGTTAATAAGCCTTCATCACTCCCTCCATACCCAGAGATGATACTGAAAGCACTTGAAGCTGTTGGAGACAGCAATGGTGCTAGCAAGTCAGCCATATCAAAGCACATAGAGTCCACTTATGGTGAGTTGCCAGCAGGGCACTCAACCCTTCTGTCTGACCACCTTGACAAGATGAAAGACAGTGGTGAGATTGTGTTCATGAAGAACAACTACATGAAGCCTGATCCAAATGCCCCACCAAAGAGAGGGCGTGGCAGGCCACCTAAGCCTAAAGATCCTCTTCCTCCTGTTGCTGCTTTGTCCCCACCAAGGCCTAGGGGTCGTCCTCCAAAGGATCCTAATGCTCCACCAAAGTCACCAAGTGCCCCAGTGTCAGGTGGTGGAAGTGGCAGGCCAAGAGGAAGACCAAAGAAGATTGCAAGGACTGAGGTGACATCATCACCAATCTCTACTGGAAGGCCAAGGGGTAGGCCTCCTAAGTCCCTAAATGCAATAACCCTAGAAAACCTTGTGGTTCCCTATTCCCTCTTCATGGCTCCGTATTTCAAGCATCGGAGAGGTTGCGGAGCAATTAGTGAGGCAATCGGTGGCTCCTTGCTCGGAATGGGTGGTTTGAATCTGGGTACAAACAATTCTGTTCAGCAAGGTAGTTGTCCGTTTGTTGTGCAGGATGAGACTGGAGGTGTTTTTGTGGTAGATGAGAACTGGGGTGAGGAACATAGTGGTGATACACCTTTGTCAGATCAGAATGGTGAATATGTTGGTGGTTTTTTTTGTAACGATGAAAACGGGGGTGTTTTCTTGGTGGGAGAAGATTGGAATGAGGAAAATGAAGAAGATGATGTGGGTAATTGTGGGCAGGAAAAAATTATACTTGATTCAAATGATGATATACTTAACATGGGTGATCTATCTTTGTTTAGTCCACATGAAATAGAGAAATATGAATTTGGGAATATTGACATAGCATACAAGTTTTACTTTGAATATGGGTTTGCTAATGGGTTTGGGATAAGGAAGGGTCGAACTCTTAAAAAGAAGAACACGTTGGAGGAGTATCAAAAAGAGTTAATGTGTTGTAGAGCTGGTCAGCGTGAAGACCGTGGTCTTAAATTGGAAGATAGGGTCCGTGAACCTAGAGCTTTGACTAGGTGTGATTGTAAGGCCAGATTTCATGTTCGTGTCAATCAGTCATCTGGTAGGTGGTTTTGTATTTGTTTTGAAGATGAACACAACCATGATCGTCTCGGTGCAGTGCATTGCAGCATGCTTCCGGTGTACAGAAGAATGTCTGATAGTGATGTGGTCCAAATGAATAACATGATTAAGGTTGGTATTAGGCCGCCAAATATATTCAACACTTTTGCTAACCAGTCTGGAGGATATGAGAAGATAGGTTTCCGGAAGAAAGACATGTATAACAAGATCAGTGAGCAAAGGCGGAGTTTGTGTTCCGATGCAAAAGGAGCTTTGGAATACCTTGGGTTGCTTCGACTAAGTGATAGCATGATGTATTTTGAACACACTGTTGATGGACAAGGAAGGCTGCAACATGTATTTTGGAGCGATGGATATAGCCAAGTGGATTACAACATTTTTGGGGAAGTTTTGGCCTTTGATGCAACTTATGGCAAAAACAAGTACTTCATGCCACTTGTTGTATTCTCGGGTGTCAACAGTCATAATCGTTCAACAATCTTTGCTGCAGCTATTATAGCCAATGAGACTGAGGAGACTTATGTTTGGCTTTTGGAGCAATTTTCCAGATGTATGAAAGGTAAATTGTCGAATGCTGTAGTAACGGATGGTGACCTTGCAATGAAAAATGCCATTGAAAGGGTTTTCCCTAATGCTTATCATAGGTTGTGTGCATGGCACTTGATGAGGAATGCAACATGTAATGTAAAAAATTCAGATTTCACCAAAGGATTTGAGGATTGTATGCTTGGTTATTATGATGTGGGGACGTTTAGAAGGAAGTGGTTGCAAAATGTGGACTTGAAGAAAACCCATGGGTGGCTTCCTTATATGAGAAGAGGAATATGTGGGCTACAGCTTATCTTAGGGGGAAATTTTTTGCGTTGCCTCAATCATATGCGTTTCAAAGAGAAGGAGGACGACTTTACATCAATTCATGGTGATCCAATGATACAAACAGAGTTGCAAGGACTTGAAGTATCAGCTTCTAAAGCGATTAGTTGTACTATTTTTTTAGTGGTCAGCCAAACGGGTAGGAGTGGGGAATGGAGGGTATCGTTGTATGACACAAGCAAGGAATTAAAATGTGCATGCCTCAGAATGGAGTCTAGAGGGTTACCTTGTGAACATATAGTTGCTGTGTTGGCTCATTTAGGGATTGACGAGATCCCTGAATCGTTAGTCCTTAAAAGGTGGAGCAAGGCTGCGAAGGATGGTTTACGTGGTAAAGAATTTGAAGCAAATCATTGTGTGGATGCTGGAAGAAGTGCTAGGAGGGCTGCACTAGCTGGTATATATGACCATGTTAGTGAGTTCCATGCTGCTACCATAGAAAAATTTAATGTTGAACGTGACAGACTTGTTGAGGACTGGACGCAATGCCGGGCTGAATTTGAAAGTGAACCAGAGTTGGGATCGGGTTGTCCCAATTCCAGTCATGAAGGTCCAAGGAACCCAACACGTGCATCAACAAAAGGACATGCTGGTGGTTCATCATCTTCAGGTATAAGATCTAGGAAAAAACAAAATTGTTCCATATGTAAACTCCCTGGACACAACAAAACCACATGTCCAAGTAGTGATGAACAACGTCGTGCCCGGATTCATGACAACGTTGGTGGCTCATCACAAGATAATGAAACTGCTGCGTGTGAAGACTATGGATATTTTGACCCTGAAGCTTGGTTGTGA 2904 0.4325 MATVEVNKPSSLPPYPEMILKALEAVGDSNGASKSAISKHIESTYGELPAGHSTLLSDHLDKMKDSGEIVFMKNNYMKPDPNAPPKRGRGRPPKPKDPLPPVAALSPPRPRGRPPKDPNAPPKSPSAPVSGGGSGRPRGRPKKIARTEVTSSPISTGRPRGRPPKSLNAITLENLVVPYSLFMAPYFKHRRGCGAISEAIGGSLLGMGGLNLGTNNSVQQGSCPFVVQDETGGVFVVDENWGEEHSGDTPLSDQNGEYVGGFFCNDENGGVFLVGEDWNEENEEDDVGNCGQEKIILDSNDDILNMGDLSLFSPHEIEKYEFGNIDIAYKFYFEYGFANGFGIRKGRTLKKKNTLEEYQKELMCCRAGQREDRGLKLEDRVREPRALTRCDCKARFHVRVNQSSGRWFCICFEDEHNHDRLGAVHCSMLPVYRRMSDSDVVQMNNMIKVGIRPPNIFNTFANQSGGYEKIGFRKKDMYNKISEQRRSLCSDAKGALEYLGLLRLSDSMMYFEHTVDGQGRLQHVFWSDGYSQVDYNIFGEVLAFDATYGKNKYFMPLVVFSGVNSHNRSTIFAAAIIANETEETYVWLLEQFSRCMKGKLSNAVVTDGDLAMKNAIERVFPNAYHRLCAWHLMRNATCNVKNSDFTKGFEDCMLGYYDVGTFRRKWLQNVDLKKTHGWLPYMRRGICGLQLILGGNFLRCLNHMRFKEKEDDFTSIHGDPMIQTELQGLEVSASKAISCTIFLVVSQTGRSGEWRVSLYDTSKELKCACLRMESRGLPCEHIVAVLAHLGIDEIPESLVLKRWSKAAKDGLRGKEFEANHCVDAGRSARRAALAGIYDHVSEFHAATIEKFNVERDRLVEDWTQCRAEFESEPELGSGCPNSSHEGPRNPTRASTKGHAGGSSSSGIRSRKKQNCSICKLPGHNKTTCPSSDEQRRARIHDNVGGSSQDNETAACEDYGYFDPEAWL 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi350g00041 967 MobiDBLite consensus disorder prediction 926 967 - -
Sebi350g00041 967 FunFam HMG-Y-related protein A 7 89 - -
Sebi350g00041 967 Pfam SWIM zinc finger 755 789 IPR007527 GO:0008270
Sebi350g00041 967 MobiDBLite consensus disorder prediction 95 125 - -
Sebi350g00041 967 SMART 26again6 765 792 IPR006564 GO:0008270
Sebi350g00041 967 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi350g00041 967 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Sebi350g00041 967 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Sebi350g00041 967 PRINTS AT-hook-like domain signature 133 143 IPR017956 GO:0003677
Sebi350g00041 967 PANTHER OS01G0519700 PROTEIN 761 934 - -
Sebi350g00041 967 MobiDBLite consensus disorder prediction 872 912 - -
Sebi350g00041 967 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Sebi350g00041 967 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi350g00041 967 MobiDBLite consensus disorder prediction 876 912 - -
Sebi350g00041 967 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Sebi350g00041 967 SMART AT_hook_2 157 169 IPR017956 GO:0003677
Sebi350g00041 967 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Sebi350g00041 967 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Sebi350g00041 967 Pfam MULE transposase domain 541 635 IPR018289 -
Sebi350g00041 967 MobiDBLite consensus disorder prediction 74 166 - -
Sebi350g00041 967 ProSiteProfiles Zinc finger SWIM-type profile. 754 790 IPR007527 GO:0008270
Sebi350g00041 967 Pfam FAR1 DNA-binding domain 330 419 IPR004330 -
Sebi350g00041 967 Gene3D - 7 87 IPR036388 -
Sebi350g00041 967 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi350g00041 967 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Sebi350g00041 967 PRINTS High mobility group protein (HMGY) signature 124 143 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Sebi350g00041 967 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Sebi350g00041 967 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi350g00041 Sebi-Chr350 850580 855534 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi350g00041 MULE 6.1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi350g00041 - - tpra:123913749 547.74