Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi350g00036 ATGGCTTCTTCCTTGGATATGTCACTGGACGATAGAATAAAGAACAGGAGTAACAACAGAGGGAGAGGTAGAGGACGTGGCAGAGCCCGTTCTGGCCGTGGGCCAAGCGGGACTCTTAGTGGTGGAAGAATGACTGGTGCTGTTAATGGTAGAAGAATGGCTGGTCCTGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAAAGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAGGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTGGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAACAATGTACTTTTGGATGGGAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCAGAGTTGCCTATATCTGCTCGTGTGAATGTCACTGGGATGAATGGACAGAGGAAGAGAACAGTTGTAATGACGCCTAGAGGTGGTCGAGCTGGAGGTCCTGCCATGCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAGCGGGAGTGGGCGTGGTCGAGGCCGTCGTGGCAGGGGTGGAGGCCGAGGTCGAGGAAGAAAGGATGCAACTGAGAAGTCAGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATGCTGAGGCCATGCATATCTCATGA 834 0.4904 MASSLDMSLDDRIKNRSNNRGRGRGRGRARSGRGPSGTLSGGRMTGAVNGRRMAGPGNGGRTSGAVRRGPLMSIRRTRPFPWQKDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGMNGQRKRTVVMTPRGGRAGGPAMPNRGAGWGRRGGTRSGSGRGRGRRGRGGGRGRGRKDATEKSAEELDKELETYHAEAMHIS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi350g00036 277 MobiDBLite consensus disorder prediction 205 277 - -
Sebi350g00036 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
Sebi350g00036 277 CDD RRM_THOC4 103 177 - -
Sebi350g00036 277 Gene3D - 99 180 IPR012677 -
Sebi350g00036 277 MobiDBLite consensus disorder prediction 1 66 - -
Sebi350g00036 277 MobiDBLite consensus disorder prediction 233 247 - -
Sebi350g00036 277 SMART rrm1_1 104 176 IPR000504 GO:0003723
Sebi350g00036 277 Coils Coil 252 277 - -
Sebi350g00036 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Sebi350g00036 277 SMART FoP_duplication_2 207 277 IPR025715 -
Sebi350g00036 277 MobiDBLite consensus disorder prediction 248 277 - -
Sebi350g00036 277 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 275 - -
Sebi350g00036 277 Pfam C-terminal duplication domain of Friend of PRMT1 213 271 IPR025715 -
Sebi350g00036 277 SUPERFAMILY RNA-binding domain, RBD 21 177 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi350g00036 Sebi-Chr350 779366 783045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi350g00036 102 177 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 1.80e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi350g00036 K12881 - gmx:100801491 400.979