Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi350g00011 ATGACTAGAAAGAAGGTGAAGCTCGCATTCATAACCAATGACTCTGCGAGGAAAGCAACATACAAGAAAAGGAAGAAGGGTCTAATGAAAAAGGTTGGTGAACTTAGCACCCTTTGTGGGATTGATGCCTGTGCTATAGTTTATAGTCCTTATGATCCTCAGCCAGAGGTTTGGCCATCCCCAATGGGTGTCCAACGTGTTCTTTCAAAGTTTAGGAGAATGCCTGAATTGGAGCAGAGCAAGAAAATGGTGAACCAAGATAGTTTTCTGAGGCAGAGGATCCAGAAGGCCAAAGAACAGGTGAAGAAACAGAGGAAGGATAACAGGGAAAAGGAGATGACCCAACTCATGTTTCAGTGCCTAAGTGCAGGTAACATAATGCAAAATATAAGTATGGTTGATTTGAATGATTTGGCATGGTTGATTGACCAGAACTTGAAGGACATCAATAGAAGGATTGAAACATTGACTAAGAATGCTGCTCAAGCCCAAGCCCAAATGGCTGCACCACCACCAGTGTTGACTGATGTTAATGTAGTAGCCAAGATTGAAGAGAATGTACAAGGGAGTCATGGCCAAGGATTTGATATGAACATGGATGTCATGCAAAAGCAGCATTGGTTTATGAATTTGATGAATAGTGGTGGTGCGGATGAGACAATGCCTTTGGGAGATCTTAATCACCAAAATAGCTTTTGGCAAAACCCATTTTTCCATTGA 720 0.4194 MTRKKVKLAFITNDSARKATYKKRKKGLMKKVGELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLSKFRRMPELEQSKKMVNQDSFLRQRIQKAKEQVKKQRKDNREKEMTQLMFQCLSAGNIMQNISMVDLNDLAWLIDQNLKDINRRIETLTKNAAQAQAQMAAPPPVLTDVNVVAKIEENVQGSHGQGFDMNMDVMQKQHWFMNLMNSGGADETMPLGDLNHQNSFWQNPFFH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi350g00011 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Sebi350g00011 239 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Sebi350g00011 239 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Sebi350g00011 239 Coils Coil 146 166 - -
Sebi350g00011 239 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sebi350g00011 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi350g00011 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi350g00011 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi350g00011 239 Coils Coil 87 114 - -
Sebi350g00011 239 PANTHER MADS BOX PROTEIN 3 152 - -
Sebi350g00011 239 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi350g00011 239 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi350g00011 Sebi-Chr350 237313 238032 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi350g00011 1 162 Type I MADS-box Gene Family AT5G48670 66.049 1.59e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi350g00011 SRF-TF 8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi350g00011 - - gmx:100813231 374.015