Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi350g00007 ATGACTAGAAAGAAGGTGAAGCTTGCATTCATAACCAATGACTCTGCGAGGAAGGCAACATTCAAGAAAAGGAAAAAAGGTCTAATGAAGAAGGTTGGTGAACTTAGCACCCTTTGTGGGATTGATGCTTGTGCTATAGTTTATAGTCCTTATGATCCTCTACCAGAGGTTTGGCCATCCCCGATGGGTGTCCAACGTGTGCTTTCAAAGTTCAGGAGAATGCCTGAATTGGAGCAGAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGGATCCAAAAGGCCAAAGAACAGGTGAAGAAACAGAGGAAGGATAACAGGGAAAAGGAGATGACCCAACTCATGTTTCAGTGCCTAAGTGCAGTAGCCAAGATTGAAGAGAATGTACAAGGGAGTCATGGCCAAGGATTTGATATGAACATGGATGTCATGCAAAAGCAGCATTGGTTTATGAATTTGATGAATAGTGGTGATGCGGATGAGACAATGCCTTTGGGAGATCTTAATCACCAAAATAACTTTTGGCCAAACCCATTTTTCCATTGA 552 0.4275 MTRKKVKLAFITNDSARKATFKKRKKGLMKKVGELSTLCGIDACAIVYSPYDPLPEVWPSPMGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIQKAKEQVKKQRKDNREKEMTQLMFQCLSAVAKIEENVQGSHGQGFDMNMDVMQKQHWFMNLMNSGDADETMPLGDLNHQNNFWPNPFFH 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi350g00007 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi350g00007 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Sebi350g00007 183 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Sebi350g00007 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi350g00007 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi350g00007 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi350g00007 183 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Sebi350g00007 183 PANTHER MADS BOX PROTEIN 3 131 - -
Sebi350g00007 183 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sebi350g00007 183 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Sebi350g00007 183 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Sebi350g00007 183 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi350g00007 Sebi-Chr350 177312 178043 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi350g00007 1 121 Type I MADS-box Gene Family AT5G48670 75.207 1.52e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi350g00007 SRF-TF 8.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi350g00007 - - gmx:100813231 279.641