Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi34g00029 ATGGCAGTAGTCTCTGAGTCCTCTAGCATCTCTGCCACCTCAGCAACCATTTCCCACAAAGTTGATGAAGAAGTCAACAAAATGAAGGAGAAGGAGGAGGACATCAAATCATCTGAACAAGATCAGGAACTTGATTTTTTCAGTCCAGAGAATAAGGGATCATCATCTTGTTGGGCTAATAGAAGCAACAACAACAATGAAGGGAAGGATGAGAACAGAGAGGAAAAGACAAAGTCAGAGTCAAGGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCACCAAAATGCACACAAACAACAACGTGGACTAACAAAGCGTCGCCAAGAGATTCAAAACAATGTTGGTGCTTCGGGGCACCCTCATCACTTTCCTTATTACCCTTATCCTAGTCTTTCCAACACACGCCCCTTTCATGGATCATATAATTGGTCACTTGGGGTTAGGATGGGGTCCATGATTCACAAGCCATCCTATTCAAATTCCCCACTTGGTCATGGTCATGGTGTTATGTGGCCATCAATCCTAAACCCTTCTTCTCATCATAGATTAAGGATTGAGGGTGGTGGAATTCTAGGTGCAAGTTCTACTTCAAGGATAGAAAATGATCATGATGGTGGGAGAACTATTCGAGACATTCTCCAATTGGGAGAGTCCTCTGCAAACGCTGCTACAAGGTTAGCCATAAATAAGCCAAATCGTTCCAACAATGAAGAACCCTCCAACTCCGAATCCTCTGGGCTTGATCTTTCACTAAAGCTTTAA 789 0.4297 MAVVSESSSISATSATISHKVDEEVNKMKEKEEDIKSSEQDQELDFFSPENKGSSSCWANRSNNNNEGKDENREEKTKSESRTFSCNFCDRKFSSSQALGGHQNAHKQQRGLTKRRQEIQNNVGASGHPHHFPYYPYPSLSNTRPFHGSYNWSLGVRMGSMIHKPSYSNSPLGHGHGVMWPSILNPSSHHRLRIEGGGILGASSTSRIENDHDGGRTIRDILQLGESSANAATRLAINKPNRSNNEEPSNSESSGLDLSLKL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi34g00029 262 MobiDBLite consensus disorder prediction 1 81 - -
Sebi34g00029 262 Coils Coil 21 41 - -
Sebi34g00029 262 MobiDBLite consensus disorder prediction 97 116 - -
Sebi34g00029 262 MobiDBLite consensus disorder prediction 1 19 - -
Sebi34g00029 262 Gene3D Classic Zinc Finger 62 129 - -
Sebi34g00029 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Sebi34g00029 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 262 IPR044246 GO:0009788
Sebi34g00029 262 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Sebi34g00029 262 MobiDBLite consensus disorder prediction 47 65 - -
Sebi34g00029 262 MobiDBLite consensus disorder prediction 66 81 - -
Sebi34g00029 262 SUPERFAMILY beta-beta-alpha zinc fingers 81 110 IPR036236 -
Sebi34g00029 262 MobiDBLite consensus disorder prediction 20 46 - -
Sebi34g00029 262 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi34g00029 Sebi-Chr34 1877653 1878520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi34g00029 74 180 C2H2 Transcription Factor Family AT5G25160 45.872 3.83e-22 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi34g00029 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi34g00029 - - lja:Lj1g3v2534910.1 188.734