Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi349g00041 ATGCAGATTTTCAACCCCATTGTTCCTGAGAACCTTATAATCAGGGCAATCCTGATATCTGCATTGTTGTCATGTGTCGCATCCTCATCCTCTGACGCTGGGATAAACGAAGCTGGTCTCACGTGCGGGTCTTATAGGTACCCTGGTGAAGGTGCAGGGAAGTTGATGCAAAACTTCATGGCTCTAATGGACGCCGTGTCGTTTCAAGTCAAAGAACGAGGTTGGGGAGCACAGACATTGCTTGGTTATTGGCCTCCAATGTACGCGTTAGGCCAATGCAACCATGATCTCAATCCCACACAGTGCTACTCATGCTTCACACAAGCGAGACAATTGCTATCAAGGTGCATACCAAAGGTAGCTGGTAGAATTTACATTGATGGTTGTTTCCTTCGTTATGATAATTATACTTTCTTCACCGAAAGCGTGGACCCTAATAACGACGCAAACGTGTGCGACTCGCCGCCGCCGACGCAGCCTTTGGAGTCCAAAGTGGTTGCGTCGGTGATATTGAACGTGACAAAGAGCGCAGGGGAACACAGGTTCGCAGTGGATGCGGAGGGAGGTGTTTTTGCTTTGGCGCAGTGCTGGGAAACGCTAGATAAAGGGAACTGCCAGAGATGTTTGAGAGAAGCAGAGGGAAAATTGCAGGGGTGTGTGCCTGGTGCTGGGGGTAGGAGTTTATTTACTGGTTGTGTTTTGAGGTATTCAACAAAGAAATTCTACAACGACGTTATTGTACCGCATGAGATAAAGGATCAACCACAACCAGTTCCAGAAAGACGTAGTGTCTGGAAGATCGTTGCATGTGCAATATCAGCAGTTGCAGTGGTTTTACTTATTGTCATTGGTGCACTTCTATGTTGGAGGAGAAAAGCATCGCGTGGCAAAGGAAGCAACGATTTTGGTGCGTCGCCTGGTTTAGCCTACATGTCTGGTTTCAGTTATAGGTACGATTTGCTTGAGAAGGCCACAAATTATTTTGATCCTGCAAACCAATTAGGCCAGGGAGGAGCTGGTTCTGTGTTCAAAGGAACACTCCCTTCAGGGACGAACGTTGCTGTTAAACGACTGTTTTTTAATTCACGACAATGGAAAGATGGGTTCTTCAACGAAGTCAATTCGATTAATGGGATTCAACACAAGAATGTGGTGAAACTTTTGGGGTGCAGCATTGAAGGGCCTGAAACCCTGTTGGTTTATGAATATGTGCCCAATAAAAGTCTTGATCAAATCCTTTTTGGTAAGGACTCGGAAAATGTTCTGACCTGGGAGAAACGATTTCAAATCATATGTGGGATAGCTGAAGGCTTAGCATACCTTCATGGAGGCTCTGGAACAAAGATTATCCACAGAGACATAAAGGCCAGCAACATTGTGCTTGATGAGAATCTTAATCCAAAAATTGCTGATTTTGGTCTTGCTCGTTCTGTTGCTGAAAATAAATCTCATCCTAGCACTGGAATTGTTGGGACACTGGGATATATGGCTCCTGAGTATGTCACCCAAGGACAACTGACAGAAAAGGCAGATGTCTATGCTTTTGGTGTGATGGTTATTGAAATTGTCTGTGGCAAGAAGAACAGTGTTTACACACAAGGGTCAACTTCAGTACTCCACTCTGTTTGGAAGAATTACAAGGCAAACAATATCACAGCATTTGTTGATCCATCTCTGGATGGCAAATTTGTGGCAGAAGAGGCATCAAATGCACTCCAAGCTGGCCTTCTTTGTACACAATCTTCAGTTACTCTTAGACCATCCATGTCTGAAGTGGTTCAAATGCTAACCAAGAAAGACTACATTATTCCCTCCCCAAAGCAACGGCCATTCCTCAATTCTAATATGCCAAGTCTTGAAAAACGGACCTTGACTTCCACCCTGAGTGCTATGTCTTCACATGGGCCTCCAAGTGCAAGATCCTCTTTCCACAGCACCACCAGTTCCTTAATCCTACACGAAGAATCAACTCTACTGGAGAATTCCTATTCTTCTTCTCCCCGGTTCACAACTACGTGGAGCCCTGATTCAAATATCCAAGCAAATATTAGGGCACCTGAGCCGAGATAG 2070 0.4498 MQIFNPIVPENLIIRAILISALLSCVASSSSDAGINEAGLTCGSYRYPGEGAGKLMQNFMALMDAVSFQVKERGWGAQTLLGYWPPMYALGQCNHDLNPTQCYSCFTQARQLLSRCIPKVAGRIYIDGCFLRYDNYTFFTESVDPNNDANVCDSPPPTQPLESKVVASVILNVTKSAGEHRFAVDAEGGVFALAQCWETLDKGNCQRCLREAEGKLQGCVPGAGGRSLFTGCVLRYSTKKFYNDVIVPHEIKDQPQPVPERRSVWKIVACAISAVAVVLLIVIGALLCWRRKASRGKGSNDFGASPGLAYMSGFSYRYDLLEKATNYFDPANQLGQGGAGSVFKGTLPSGTNVAVKRLFFNSRQWKDGFFNEVNSINGIQHKNVVKLLGCSIEGPETLLVYEYVPNKSLDQILFGKDSENVLTWEKRFQIICGIAEGLAYLHGGSGTKIIHRDIKASNIVLDENLNPKIADFGLARSVAENKSHPSTGIVGTLGYMAPEYVTQGQLTEKADVYAFGVMVIEIVCGKKNSVYTQGSTSVLHSVWKNYKANNITAFVDPSLDGKFVAEEASNALQAGLLCTQSSVTLRPSMSEVVQMLTKKDYIIPSPKQRPFLNSNMPSLEKRTLTSTLSAMSSHGPPSARSSFHSTTSSLILHEESTLLENSYSSSPRFTTTWSPDSNIQANIRAPEPR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi349g00041 689 FunFam Cysteine-rich receptor-like protein kinase 2 299 403 - -
Sebi349g00041 689 CDD STKc_IRAK 334 598 - -
Sebi349g00041 689 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Sebi349g00041 689 SUPERFAMILY Protein kinase-like (PK-like) 314 623 IPR011009 -
Sebi349g00041 689 SMART serkin_6 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi349g00041 689 MobiDBLite consensus disorder prediction 664 681 - -
Sebi349g00041 689 Gene3D - 42 138 IPR038408 -
Sebi349g00041 689 Gene3D - 155 241 IPR038408 -
Sebi349g00041 689 Pfam Protein kinase domain 331 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi349g00041 689 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 87 629 - -
Sebi349g00041 689 Gene3D Transferase(Phosphotransferase) domain 1 404 605 - -
Sebi349g00041 689 ProSiteProfiles Gnk2-homologous domain profile. 139 241 IPR002902 -
Sebi349g00041 689 Pfam Salt stress response/antifungal 78 136 IPR002902 -
Sebi349g00041 689 Pfam Salt stress response/antifungal 181 238 IPR002902 -
Sebi349g00041 689 MobiDBLite consensus disorder prediction 664 689 - -
Sebi349g00041 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Sebi349g00041 689 Gene3D Phosphorylase Kinase; domain 1 307 403 - -
Sebi349g00041 689 FunFam Cysteine-rich receptor-like protein kinase 2 404 604 - -
Sebi349g00041 689 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi349g00041 Sebi-Chr349 892460 895702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi349g00041 18 644 Receptor kinase-like Gene Family AT1G70520 41.705 2.95e-155 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi349g00041 Pkinase 5.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi349g00041 - - gmx:100780384 866.3