Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi349g00022 ATGCATTCTCACTCTCTCCTATTAAGGAACACAAATCCAGATGTTTTGAAACACCCCTCAGTTTCTGTTACTCCTTCTCTGATGGCCCTTGAGACAAATTTCAAAGAAAACTATGTCTCACAGACAATGCATTTGCAAGAAAACTACTTGAATCCCAGCATGAAAGATGAGCTTCCTTTTGGGGCTCCTTCCTCACAGGGTTTCTTGCAAGATTTTAACCATATTGACCAATTTCATGGGAATGGCTCCTCATCCAACAATCCAGTTTTTGGGGTCCAAACTCCAAATTTTGATCCTTTTAATAATGCAACCAGTGAGTGTGCACCCACAGATTTTGAAGTTTATGAGGGCAAGCCTTTTGCTGAGAGCAATGGTAGTGGACATGCTCACATTATGGACAATTTCCAATATGAAGGTTATGGTTTGAACCTGATCCCTGAGAGGAATCAACTGGATATGATGGTTGCAAACCAAAGTTATATGCCCTTTAATCCTCTAGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATATCCCCAGCAAACTATTATAAAAGAGTTGACATGAATAAAAACAACAGGGAATCTCCAAACACTAGAAGAACATATAAAGCTAGAAAGAAGTCCAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAACTGGTTGGACAATATGGAGTAAGGAAGTGGTCTAATATTGCTCAAAAGTTGCCTGGGAGAATAGGGAAACAATGCAGAGAACGGTGGCATAATCATTTAAGGCCTGACATTAAGAAGGACATATGGACTGATGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATAGGGAATAAGTGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACAGAGAACTCAATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATACTCCAAAAGAAAATGTCGCTCTAACACAAGCAAAACAGCACCACCTCAGCCCCAGATTATAGATCAATTTTGTTCCAATGACCGCATGGTGCCAACAAACTTTGACTTCAATGAGGTCCCAGATTTTTGCTTGGATGATAATTTGTTTGAAGAGGGGTGTGGTATAGATTCTTTGCTAGATGATTTGCCAAGTGTTCCTACCATGAATGAGAAAGATTTTGATGGAAAAATTCAATGTGCTCTAACTATGGAGGGAAAGCAAATTGATAAGGGAAAAGGAGCCACGCAAGTTGTGAATCTTGATGAGCATCACTTTGAGGCAGAGATGTCAGAGGAGATGATGGCATCCACTGTGGGGATTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGATGTGTCATGTTAATGGAAGTATTGATGTCTAA 1380 0.4014 MHSHSLLLRNTNPDVLKHPSVSVTPSLMALETNFKENYVSQTMHLQENYLNPSMKDELPFGAPSSQGFLQDFNHIDQFHGNGSSSNNPVFGVQTPNFDPFNNATSECAPTDFEVYEGKPFAESNGSGHAHIMDNFQYEGYGLNLIPERNQLDMMVANQSYMPFNPLETKPLNFVVPDEVSCISPANYYKRVDMNKNNRESPNTRRTYKARKKSNIVKGQWTVDEDRLLIQLVGQYGVRKWSNIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSNTSKTAPPQPQIIDQFCSNDRMVPTNFDFNEVPDFCLDDNLFEEGCGIDSLLDDLPSVPTMNEKDFDGKIQCALTMEGKQIDKGKGATQVVNLDEHHFEAEMSEEMMASTVGIEVKKEMDLVEMMCHVNGSIDV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi349g00022 459 FunFam Transcriptional activator Myb isoform A 216 269 - -
Sebi349g00022 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 267 IPR017930 -
Sebi349g00022 459 CDD SANT 272 314 IPR001005 -
Sebi349g00022 459 Gene3D - 216 269 - -
Sebi349g00022 459 SUPERFAMILY Homeodomain-like 214 310 IPR009057 -
Sebi349g00022 459 FunFam Transcription factor MYB119 270 332 - -
Sebi349g00022 459 ProSiteProfiles Myb-like domain profile. 264 314 IPR001005 -
Sebi349g00022 459 Pfam Myb-like DNA-binding domain 272 311 IPR001005 -
Sebi349g00022 459 Pfam Myb-like DNA-binding domain 217 263 IPR001005 -
Sebi349g00022 459 CDD SANT 220 263 IPR001005 -
Sebi349g00022 459 ProSiteProfiles Myb-like domain profile. 212 263 IPR001005 -
Sebi349g00022 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 268 318 IPR017930 -
Sebi349g00022 459 Gene3D - 271 336 - -
Sebi349g00022 459 SMART sant 216 265 IPR001005 -
Sebi349g00022 459 SMART sant 268 316 IPR001005 -
Sebi349g00022 459 PANTHER MYB PROTEIN-RELATED 199 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi349g00022 Sebi-Chr349 408799 410791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi349g00022 88 381 MYB Transcription Factor Family AT4G18770 43.923 1.45e-82 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi349g00022 Myb_DNA-binding 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi349g00022 K09422 - gmx:100816653 640.188