Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi349g00001 ATGAAAAACTCAAACACTACTAGTGATTCATCAAAACTCGATCGCAAAACTATCGAAAGGAACCGCAGAATTCACATGAAGTCTCTCTGCTTCAAGCTTATTTCTATTATCCCTTCTAAGTACCTCAAACCCTCCAAGGACATGCTTTCACAGCAGGACCAGCTGGATCTAGCAGCCACTTATATAAAGCATTTGAGAGAAAGAATAGAAAAACTGAAGGGGAAAAAGGAGCAAACCATGAGCATGATGAGCTCAAACCAAAACAACAACAATAATAGGATTTTCAATATTGGCTCAAAATTGCCAATACTTGAGATAAGAGACTTGGGTTCTGGTATTGAAGTCATGTTGATAAGTGGTTTGAACAAGAACTTCATGCTCTATGAAATAATTGGTGTCCTTGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAACTTCTCTACCATTGCTGATAAGATCTTTTACACT 468 0.3825 MKNSNTTSDSSKLDRKTIERNRRIHMKSLCFKLISIIPSKYLKPSKDMLSQQDQLDLAATYIKHLRERIEKLKGKKEQTMSMMSSNQNNNNNRIFNIGSKLPILEIRDLGSGIEVMLISGLNKNFMLYEIIGVLEEEGAEVVTANFSTIADKIFYT 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi349g00001 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 79 IPR036638 GO:0046983
Sebi349g00001 156 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 156 - -
Sebi349g00001 156 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 65 IPR011598 GO:0046983
Sebi349g00001 156 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Sebi349g00001 156 FunFam Transcription factor bHLH162 3 94 - -
Sebi349g00001 156 Coils Coil 62 82 - -
Sebi349g00001 156 Gene3D - 1 94 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi349g00001 Sebi-Chr349 14760 15353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi349g00001 7 156 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.975 2.65e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi349g00001 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi349g00001 - - vun:114179389 239.965