Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi348g00078 ATGGGTTGGTGGAATAGCAGTAATGAATCGTTTGAGATTCCACGTGGCCAAAGCCACAGAGGCCGTGATGTTGAATTAGGAGAATATGCAATGAATGGAGGAGACCTGGGTTTGGACAGTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAGTATGCAAAGCTGGATAATCTTTTGAGAAAGCTCCAGGATGCCCACGAGGAGTCCAAATCTGTGACCAAGGCTCCTGCTATGAAGGTTTGTAATTATGATATTGCTATGAAGAAGAATTTGCTGAAGTATAAACAAAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTACTTAAAGACCAAAATTGAAGAACTCGACAAAGAGAATTTGGCAAATAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGCTGCTGACCGGTCAAGAACAGCAACAACCCTTTCCTTAAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGAACCTGAGAGAATCCATCCATCAAGAATATCGTGAGGTTGTTGAGAGACGTGTCTTTACAGTGACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAACAAATTTTCCAGAAAGCTATTCAGGAACAGGGACGAGGCCAGATAATGGACACACTAGCAGAAATTCATGAGCGACATGAAGCAGTTAGAGACATGGAGAGAAAGCTTCTTGATTTACAACAGGTTTCAAGTGCAGTAGATCACGTGCAGCAAGGCAATAATGCCCTTCAGAAGGCAAAGAAACTGCAAAGGAACTCTAGAAAATGGATGTGCATTGCAATCATAATACTCCTCATAGTTGTTATAATCATCGTTGTTGCTGTCATCAAACCATGGGTTAGCAAAAGGGGTGCTTAG 903 0.4153 MGWWNSSNESFEIPRGQSHRGRDVELGEYAMNGGDLGLDSFFKKVQELDKQYAKLDNLLRKLQDAHEESKSVTKAPAMKVCNYDIAMKKNLLKYKQRMEKDVDEVKKTAHYLKTKIEELDKENLANRQKPGCGKGSAADRSRTATTLSLKKKLKDKMAEFQNLRESIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIHERHEAVRDMERKLLDLQQVSSAVDHVQQGNNALQKAKKLQRNSRKWMCIAIIILLIVVIIIVVAVIKPWVSKRGA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi348g00078 300 CDD SynN 38 208 IPR006011 GO:0016020
Sebi348g00078 300 Coils Coil 45 75 - -
Sebi348g00078 300 Coils Coil 88 122 - -
Sebi348g00078 300 Pfam Syntaxin 40 244 IPR006011 GO:0016020
Sebi348g00078 300 SMART SynN_4 33 172 IPR006011 GO:0016020
Sebi348g00078 300 PANTHER SYNTAXIN 42 282 IPR045242 -
Sebi348g00078 300 Gene3D - 36 246 - -
Sebi348g00078 300 Gene3D - 247 292 - -
Sebi348g00078 300 Coils Coil 150 170 - -
Sebi348g00078 300 SUPERFAMILY t-snare proteins 38 244 IPR010989 GO:0016020|GO:0016192
Sebi348g00078 300 Coils Coil 297 300 - -
Sebi348g00078 300 Pfam SNARE domain 243 287 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi348g00078 Sebi-Chr348 1051919 1056005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi348g00078 10 300 SNARE and Associated Proteins AT3G03800 63.898 1.53e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi348g00078 K08486 - gmx:100306329 450.284