Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi348g00059 ATGGACATGGATGTTTGCCGGAATGTATCACTTTCCGGTGAGTGTCAGCAACAACTTTCTACCCTTGATGACCTTTTCTCTGCCCAGAACACGGAAGTGGATTTTGGCATGGAATGGCTATCAGTGTTTGTGGAAGATTGTTTTTCCAGTAAGCCAAGTTGTCTCTTGGCCCCTGCATCTGCTGGTGTTGAAAATAAAAGTACCACAAACACCAGAGCTTCAAGCACAATACAGAGACCCATGCAAAATCATTCTTCTTTGCAAAATTTTGCTGTGCCTGGGAAGGCTAGAAGCAAAAGGAAAAGGCTTTCAGCTCCTAGAACAAGAGACACTTTAAGCACTTGGTCACCCCATATATTAGGCACACAGAGTGATGGCTTGAGTTCAGACCCTCCTCTGCTGAAGCAGGCTTATTGGTTAGCTGATAGTGAACTCATTGTCCCTAAAAAGAATGATGAGCAAGAAAGGGTAGCCAAAAGTGGGGAAGTGGAGAAGGAGAACTTGGGGGATTCTGAACTTGAAATTAACAACAATGGGCAGCATCCAATTCCAAGGAGGTGCACCCATTGTTTGGCTCAGAGGACCCCACAATGGAGAGCTGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTACTTGCATTCTAATTCCCACAAGAAAGTTATGGAGATGAGAATGGCTGTTCTATCTCCCGATGAGCAGTAG 777 0.4543 MDMDVCRNVSLSGECQQQLSTLDDLFSAQNTEVDFGMEWLSVFVEDCFSSKPSCLLAPASAGVENKSTTNTRASSTIQRPMQNHSSLQNFAVPGKARSKRKRLSAPRTRDTLSTWSPHILGTQSDGLSSDPPLLKQAYWLADSELIVPKKNDEQERVAKSGEVEKENLGDSELEINNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSPDEQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi348g00059 258 CDD ZnF_GATA 186 233 IPR000679 GO:0006355|GO:0043565
Sebi348g00059 258 ProSitePatterns GATA-type zinc finger domain. 187 212 IPR000679 GO:0006355|GO:0043565
Sebi348g00059 258 PANTHER GATA TRANSCRIPTION FACTOR 23 254 - -
Sebi348g00059 258 MobiDBLite consensus disorder prediction 66 92 - -
Sebi348g00059 258 Gene3D - 177 249 IPR013088 GO:0006355|GO:0008270
Sebi348g00059 258 SMART GATA_3 181 235 IPR000679 GO:0006355|GO:0043565
Sebi348g00059 258 ProSiteProfiles GATA-type zinc finger domain profile. 185 217 IPR000679 GO:0006355|GO:0043565
Sebi348g00059 258 Pfam GATA zinc finger 187 221 IPR000679 GO:0006355|GO:0043565
Sebi348g00059 258 MobiDBLite consensus disorder prediction 66 117 - -
Sebi348g00059 258 FunFam GATA transcription factor 176 257 - -
Sebi348g00059 258 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi348g00059 Sebi-Chr348 825747 826809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi348g00059 37 249 C2C2-Gata Transcription Factor Family AT4G32890 44.954 3.13e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi348g00059 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi348g00059 - - gmx:100776805 380.948