Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi348g00052 ATGTTCCCTTTAGTTTTGTTGCTTTTTCTTCTCTGCAACTCTCTTGTTGCACGTGTGAGCTCTATCAACAGTGAAGGCTCTGCGCTTTTGACACTGAAGGAGTCCATCATCACAGACCCAGAAGGGTTTATGACTAACTGGAACTCTTCTGATGACAACCCATGTTTGTGGAATGGGATCGCATGCAAGGATCAAAGTGTTGTCTCCATTAGTATCCCAAAAAGGAAACTTTATGGGTTTCTTCCTTCTGGGCTAGGATCTCTGTCCCAGCTTCGCCATGTGAATTTGAGGAACAATAAGCTCTTTGGGAGCTTGCCTTTTGAGCTCTTTGAAGCTCAGGGACTGCAAAATTTGGTGCTTCATGGCAATTCCTTTTCTGGGTCTGTTCCAAATGAGATTGGGAACCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTCAATGGGTCTTTACCTGCCACAATACTCCAATGCAAAAGGCTCAGAACAGTTGTTCTTAGTCATAATAACTTCACCGGTCCTCTGCCAGATGGATTTGGTGGTAATTTGTCTTCTTTGGAAAAACTAGACCTTTCTTTCAATCAATTCAATGGTTCAATTCCTAGTGATATGGGAAAACTATCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATCCCAGCCACCCTTGGTAATCTTCCTGAGAAGGTTTACATTGATCTTTCTTACAATAACTTAAGTGGTCCAATACCCCAAACTGGTGCATTAATTAATAGAGGACCAACAGCTTTTATTGGCAATTCTGATCTATGTGGCCCCCCTTTGAAGAATCTATGTGCTAATTCACCTTCCTCACTTCCATCTTTGCCTGATAATAACACATCTCAGGATAGTGATGATGGTTTTGGGAAAAGTGGGAAAAGCAAAGGGCTGAGTAAAGGTGCTGTGGCTGGCATTGTTGTGGGAGATGTAATTGGAATTTGCCTTATAGGTTTGCTATTCTCTTATTTCTACTCAAGGGTTTGTGGTTTTAATCAGGAGCAGGATGAAAATGGTTTTGACAAGGGTGGGAGAGAGAGGAAGGAGTGTTTATGCTTCAGAAAGGATGAGTCTGAGACACTATCTGATCATGTTGAGCAATATGATCTTGTCCCATTAGATGCTAGAGTGGCCTTTGATTTGGATGAGCTTCTTAAAGCTTCAGCTTTTGTTTTGGGAAAGAGTGGAATAGGGATTGTCTACAAAGTGGTGCTTGAAGATGGCCTCACCTTGGCTGTGAGAAGATTGGGAGAGGGAGGTTCTCAAAGGTTTAAAGAGTTTCAAACAGAAGTTGAAGCAATAGGAAAGTTAAGGCATCCAAATATTGTTACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATCTATGATTATATTCCCAATGGAAGCCTTGCTGCAGCAATTCATGCACTAGAAGAGAAAATGAAGTAA 1482 0.4123 MFPLVLLLFLLCNSLVARVSSINSEGSALLTLKESIITDPEGFMTNWNSSDDNPCLWNGIACKDQSVVSISIPKRKLYGFLPSGLGSLSQLRHVNLRNNKLFGSLPFELFEAQGLQNLVLHGNSFSGSVPNEIGNLRYLQTLDLSQNFFNGSLPATILQCKRLRTVVLSHNNFTGPLPDGFGGNLSSLEKLDLSFNQFNGSIPSDMGKLSSLQGTVDLSHNHFSGSIPATLGNLPEKVYIDLSYNNLSGPIPQTGALINRGPTAFIGNSDLCGPPLKNLCANSPSSLPSLPDNNTSQDSDDGFGKSGKSKGLSKGAVAGIVVGDVIGICLIGLLFSYFYSRVCGFNQEQDENGFDKGGRERKECLCFRKDESETLSDHVEQYDLVPLDARVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGSLAAAIHALEEKMK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi348g00052 493 Gene3D Phosphorylase Kinase; domain 1 370 475 - -
Sebi348g00052 493 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
Sebi348g00052 493 SUPERFAMILY Protein kinase-like (PK-like) 405 486 IPR011009 -
Sebi348g00052 493 SMART LRR_typ_2 136 160 IPR003591 -
Sebi348g00052 493 SMART LRR_typ_2 88 112 IPR003591 -
Sebi348g00052 493 SMART LRR_typ_2 185 209 IPR003591 -
Sebi348g00052 493 SUPERFAMILY L domain-like 24 277 - -
Sebi348g00052 493 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Sebi348g00052 493 ProSiteProfiles Protein kinase domain profile. 400 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi348g00052 493 Pfam Protein tyrosine and serine/threonine kinase 406 488 IPR001245 GO:0004672|GO:0006468
Sebi348g00052 493 MobiDBLite consensus disorder prediction 283 311 - -
Sebi348g00052 493 FunFam Leucine-rich repeat receptor-like protein kinase 22 179 - -
Sebi348g00052 493 Pfam Leucine rich repeat 162 223 IPR001611 GO:0005515
Sebi348g00052 493 PANTHER OS05G0588300 PROTEIN 159 486 - -
Sebi348g00052 493 Pfam Leucine Rich Repeat 139 158 IPR001611 GO:0005515
Sebi348g00052 493 Gene3D Ribonuclease Inhibitor 18 77 IPR032675 -
Sebi348g00052 493 FunFam Leucine-rich repeat receptor-like protein kinase 383 475 - -
Sebi348g00052 493 Gene3D Ribonuclease Inhibitor 78 283 IPR032675 -
Sebi348g00052 493 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi348g00052 Sebi-Chr348 715602 718003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi348g00052 4 486 Receptor kinase-like Gene Family AT2G01210 67.894 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi348g00052 PK_Tyr_Ser-Thr 5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi348g00052 - - gmx:100810225 777.704