Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi348g00044 ATGTTCAAAGAGTCAATCAGTCATAATCCTCCTCTCAAGTCTCTACAACTGGGGAAGCACTCCATTTACTTTGACTCTGGATTTGAGAAATCCATGATGGTTCAATACTCACTCTTGCGTTTCCTTGTTCTCTGTTATTCTTTGCTTCCTCTCTTGGCTGAAGATGGAAAGAAATACAACCAAAGGAACTGCCCAACATCTTTTCATTGCGGGAAATTCGGAGACATCCAGTTCCCATCCACCAACAAAAACAACCTGGACTGTGGTTTGCCCATAAGGGGCTGTGATGATCAAAATGCAGCAACAGAAGTCCAGTTATCAAACCAAACATGGTATGAATTTGAATCCATAAATGGAAACAATTCAATTTCTGTCATAGACCATAAGCTTCAAAGGCTCTTGGCCTCTAGATGTTGCAATGCCTTCACTTATAATATTAATGCTACCCTTACTCCGAGCACTCCTGTACTGCATTTTCAGATCGAAATGGAACACAGTATAACACTGTTAAGATGCAGACACGCTTCTTATAGACCTAGCAATAAATACATAAAGTATACAAGCTGTAATGGCTACGATATCTACTATCCTACTCAATCTCCTGAAATAGATGACATGTATACAGGCTCTGAAAATGCATGTTCAACCATCCAGCTTCCAATTAAATCATCGCCCATGGACTATTCTACAGGCACAGCCCTTTACAATTTGTTAACAGCTGGATTCCGCATAATATTATTGTTATCGGAGGATTGTGGTAAGTGCTATGAAAATGGAGGCCAATGTCAAGTTGACAAAGAATCATTATATTGTGCCGGTTCCAAAGAACAAGCAGATCCTCCTCAGCCGAGAAAAGCAGATCCTCCGGTACAAGCAGTTTCTCATGATCAACAGAAATGGTTTACGAAGGGTATTATACTTAAAATAGAGAGTGGCGATGCCTTCTTAGGGATCCCTGTCTTCTCCTATACAGAGCTTGAGAAAGCAACAAACAAATTTGACGAAGCTAGAGAACTTGGAAGTGGAGGCTATGGGAATGTTTACTATGGAACGCTCCATGATGGACGGGAAGTTGCTGTCAAGCGCCTATATGAGCACAACTACAGACAAGTGGAGCAGTTCATGAATGAAATAGAGATCCTTACACGTCTGCACCACAGAAATCATGTGTCCCTTTATGGCTGCAGTTCTCGGCACAGCCGTCAACTACTGCTTGTGTATGAATATATTCCAAATGGCACGGTTGTTTGTCATCTCCATGTTGATATAACCAGAGAAACGGATGAGATTAACTTGTCAAATCTAGCCATAAAGAAGATCCAAAAGCGCGCATTCTGTGAACTGGTAGATCCTTCCCTTGGCTTTGAGTTAGATCAAGAATTTAAAAGGAAAATAGTTTCAGTAGCAGAATTGGCGTTTCAGTGTTTGAAAGAGTACAAGCATTTGAGACCTTCAATGGTAGAAGTTTTGGAGGAGCTGAAGAGAATTGATGCTGGGGAGGATATGCCAAAGAATATAAAGGAAGCAGATGTTAACCTCCCAGTGTAA 1548 0.4102 MFKESISHNPPLKSLQLGKHSIYFDSGFEKSMMVQYSLLRFLVLCYSLLPLLAEDGKKYNQRNCPTSFHCGKFGDIQFPSTNKNNLDCGLPIRGCDDQNAATEVQLSNQTWYEFESINGNNSISVIDHKLQRLLASRCCNAFTYNINATLTPSTPVLHFQIEMEHSITLLRCRHASYRPSNKYIKYTSCNGYDIYYPTQSPEIDDMYTGSENACSTIQLPIKSSPMDYSTGTALYNLLTAGFRIILLLSEDCGKCYENGGQCQVDKESLYCAGSKEQADPPQPRKADPPVQAVSHDQQKWFTKGIILKIESGDAFLGIPVFSYTELEKATNKFDEARELGSGGYGNVYYGTLHDGREVAVKRLYEHNYRQVEQFMNEIEILTRLHHRNHVSLYGCSSRHSRQLLLVYEYIPNGTVVCHLHVDITRETDEINLSNLAIKKIQKRAFCELVDPSLGFELDQEFKRKIVSVAELAFQCLKEYKHLRPSMVEVLEELKRIDAGEDMPKNIKEADVNLPV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi348g00044 515 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 38 421 IPR044652 GO:0004672
Sebi348g00044 515 ProSiteProfiles Protein kinase domain profile. 333 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi348g00044 515 Gene3D Transferase(Phosphotransferase) domain 1 414 511 - -
Sebi348g00044 515 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Sebi348g00044 515 SUPERFAMILY Protein kinase-like (PK-like) 317 420 IPR011009 -
Sebi348g00044 515 Pfam Protein tyrosine and serine/threonine kinase 336 426 IPR001245 GO:0004672|GO:0006468
Sebi348g00044 515 Gene3D Phosphorylase Kinase; domain 1 310 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi348g00044 Sebi-Chr348 629062 633305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi348g00044 421 500 Receptor kinase-like Gene Family AT1G25390 48.750 4.17e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi348g00044 PK_Tyr_Ser-Thr 2.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi348g00044 - - qsa:O6P43_025739 362.073