Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi348g00042 ATGAGTAGCAATGGCCAAGCTTCTGGTGCTAGTCACAACATCAGGGGTTTAATCTGCAACGCTAGTGCTGGTGCTGCTGCTGGGGCAATAGCGGCTACGTTTGTGTGCCCATTGGATGTGATCAAGACAAGGCTACAAGTTCATGGCCTTCCTCCTGCGCAGAAAGGTAGTGTCATTGTCACGGGCTTGCAGAATATAGTGAGGGCTGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTGGCATTACTTCCAAATTGGGCAGTTTACTTCACAGCTTATGAGCAACTAAAAGGCCTGCTTCGATCACGTGATGGTTGCAACGAACTCACTACTATTGGAAATATTATAGCTGCTGCTGGTGCTGGAGCGGCAACGGCTATTTCTACAAATCCATTGTGGGTTGTTAAAACAAGACTTCAAACACAAGGAATGAGGCCTGATGTTGTTCCATACAAGAGTGTTCTATCTGCTTTGACAAGGATTACACATGAGGAAGGCATACGAGGGCTATATAGTGGTATTGTGCCTTCATTGGCTGGCGTAAGTCACGTTGCAATTCAATTCCCAGCATATGAAAAGATCAAGTCATACATGGCAGAAAAAGATAACACAACTGTTGACAAGCTAAGTCCAGGGAGTGTTGCCATCTCATCATCAATTTCAAAAGTAATTGCCTCTGTAATGACTTATCCACACGAGGTAATACGTTCCAGGTTGCAAGAGCAAGGCCAAGCCAAAAGTAGTGGGGTCCAATATGCAGGAGTTATTGATTGTACTAAGAAGGTGTTTCAAAAGGAAGGCATTCCAGGCTTTTATCGTGGTTGTGCAACCAATCTATTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACACAGGTTTTTAGAGCGGATTGTACCTGAGGACAAAGGGTATCCAGAAGGCCGTTCTAAATCCAGTGAACTTAACAAGCCCCAGCCAAAAGCCAGTGACATTAACATTACAAATGGCACCGATAGGGGGCAATCACCATCTCAATCTAACAAGAAAGCTTCATCAATTCCTCTTGGAAACAAAGAGCAGCTAACCTGA 1098 0.4426 MSSNGQASGASHNIRGLICNASAGAAAGAIAATFVCPLDVIKTRLQVHGLPPAQKGSVIVTGLQNIVRAEGFRGMYRGLSPTILALLPNWAVYFTAYEQLKGLLRSRDGCNELTTIGNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRITHEEGIRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYMAEKDNTTVDKLSPGSVAISSSISKVIASVMTYPHEVIRSRLQEQGQAKSSGVQYAGVIDCTKKVFQKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLERIVPEDKGYPEGRSKSSELNKPQPKASDINITNGTDRGQSPSQSNKKASSIPLGNKEQLT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi348g00042 365 Pfam Mitochondrial carrier protein 214 305 IPR018108 -
Sebi348g00042 365 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Sebi348g00042 365 Pfam Mitochondrial carrier protein 20 105 IPR018108 -
Sebi348g00042 365 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 18 309 IPR044712 GO:0006862|GO:0055085
Sebi348g00042 365 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Sebi348g00042 365 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Sebi348g00042 365 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Sebi348g00042 365 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Sebi348g00042 365 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Sebi348g00042 365 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 16 304 - -
Sebi348g00042 365 MobiDBLite consensus disorder prediction 311 365 - -
Sebi348g00042 365 MobiDBLite consensus disorder prediction 321 365 - -
Sebi348g00042 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Sebi348g00042 365 SUPERFAMILY Mitochondrial carrier 17 299 IPR023395 -
Sebi348g00042 365 Gene3D Mitochondrial carrier domain 16 304 IPR023395 -
Sebi348g00042 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 103 IPR018108 -
Sebi348g00042 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi348g00042 Sebi-Chr348 617460 621825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi348g00042 1 361 Chloroplast and Mitochondria Gene Families AT1G25380 63.587 7.06e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi348g00042 K15115 - gmx:100797064 603.208