Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi348g00038 ATGCCAACACCACCTTCTCTTTCCATCTTCTCCTTAACCTTCCACTTCCTTTTCCTCCTTCTACAAGCCTCCAACACCCCAGACTTCCAACCACTCATGGCCTTCAAAACCGCTTCCGACACTACCAACAAACTCAACACATGGAACTCCACCACCCACCCATGCACCTGGCACGGTGTCTCCTGTCTCAGAAACCGCGTCTCTCGCCTCGTCCTCGAAGACCTCAACCTCCAAGGCTCCATCCAACCCTTAACCTCTCTCACTAACCTCCGACTCCTCAGCCTTAAACGCAACCGTTTTAACGGTCCCATTCCCAACCTCTCCAATCTCACCGCCTTAAGGCTTCTCTTCCTCTCTCACAACAACTTCTCCGGTGAGTTCCCCTCATCGCTCACGTCCCTCACTCGCCTCTACCGTCTCGATCTGTCCCACAACAACCTCTCCGGCGAGATTCCGGCTACGGTCAACCGTTTGACGCACCTTCTCACTCTCCGCGTTGACCAGAACCAAATCCAAGGCCACATTCCGGACTTAAACCTCTCATATCTTCAAGACTTCAACGTCTCCAGTAACAACCTATCGGGTCGAATACCCGAAACCCTCTCGGGTTTCCCCGGATCCGCTTTCGAGCAAAACCCGTCTCTCTGTGGAGCTCCATTGCAGAAATGCAAAGACGTCCCTGCACTTGCTACACCATTGGTTCCTACCCCAGCAACAACAACTGTGCCATCTTCTCCGAGTTCAATGCCCGAAAACGAATCAGTAGACAAGACCCGAAAAAACGGAGCTCCGAAAATGGGGCCGATGGTTCTAATCGCGATTGTACTCGGTGATGTTTTGGTGCTAGCCGTGGTTTCACTGCTTCTCTACTGCTACTTCTGGCGAAACTACAATGCTGAGTTCAGGGAAGGAAAAGCAGGGTCGTCGAATTCAAAGCGTGTGGAGGGTGAAAAGATGGTTTATACTTCGAGTGTTTCCGCTGGACAACAGGGTTTGGAGAAGGGTAGAATGGTGTTCTTTGAAGGGGTGAAGAGGTTTGAGCTAGAGGACTTGTTGCGTGCCTCTGCGGAAATGCTGGGGAAGGGTGGGTTTGGCACAGCTTACAAGGCTGTTCTTGATGATGGAACAGTTGTTGCTGTGAAGAGGCTCAAGGAGATTCAAATTGGAGGAAAGAGAGAGTTTGAGCAGCGAATGGAAATGCTGGGAAGGTTAAGAAACCCCAACATTGTTAGCTTAAGAGCTTACTATTTTGCAAGGGATGAGAAATTGCTTGTCTGTGATTACATGCCTAATGGTAGCTTGTTCTGGCTCCTTCACGGTAACCGAGGACCCGGGAGAACCCCACTGGACTGGACCACGAGGCTCAAGATAGCAGCTGGAGCGGCACGAGGTGTGGCTTTCATTCACAACTCGTGCAAGTCCCATAACCATAATAATAATATCACCCACGGTAACATCAAATCCACAAACATACTCGTTGACGTGGCGGGGAATGCACGCGTGGCGGATTTTGGGCTCTCCATCTTCGCGGGCCCATCAAACGGAAGATCCAATGGCTACCGGGCTCCGGAGGCATCGGACGGTCGAAAACAGTCCCAGAAGGCTGATGTGTACTCCTTTGGCGTTCTTCTGATGGAGATGCTGACGGGGAAGTGCCCATCCGCCGTGGACGGCGGCGGCACGGCGGTGGACCTCCCTAGGTGGGTTCAATCCGTGGTGAGAGAGGAATGGACCGCTGAGGTGTTTGATCTTGAGCTGATGAGGTACAAGGATATTGAGGAGGAAATGGTGGCGCTGCTTCAGATAGCTATGGCGTGCACTACGACTGCACCTGATCAACGGCCCAGGATGAGCCACGTGGTTAAGATGATCGAGGAGTTGCGTGGGGTCGAGGTTTCACCGTGTCATGACACGTTGGACTCGGTTTCTCAGTCACCTTCCGTGTCTGAAGATGCACGTGGAGGTGGAGCTAGCGTTTTCTACCGACTAGGGTAG 1995 0.5233 MPTPPSLSIFSLTFHFLFLLLQASNTPDFQPLMAFKTASDTTNKLNTWNSTTHPCTWHGVSCLRNRVSRLVLEDLNLQGSIQPLTSLTNLRLLSLKRNRFNGPIPNLSNLTALRLLFLSHNNFSGEFPSSLTSLTRLYRLDLSHNNLSGEIPATVNRLTHLLTLRVDQNQIQGHIPDLNLSYLQDFNVSSNNLSGRIPETLSGFPGSAFEQNPSLCGAPLQKCKDVPALATPLVPTPATTTVPSSPSSMPENESVDKTRKNGAPKMGPMVLIAIVLGDVLVLAVVSLLLYCYFWRNYNAEFREGKAGSSNSKRVEGEKMVYTSSVSAGQQGLEKGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGTVVAVKRLKEIQIGGKREFEQRMEMLGRLRNPNIVSLRAYYFARDEKLLVCDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSHNHNNNITHGNIKSTNILVDVAGNARVADFGLSIFAGPSNGRSNGYRAPEASDGRKQSQKADVYSFGVLLMEMLTGKCPSAVDGGGTAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVALLQIAMACTTTAPDQRPRMSHVVKMIEELRGVEVSPCHDTLDSVSQSPSVSEDARGGGASVFYRLG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi348g00038 664 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Sebi348g00038 664 Gene3D Phosphorylase Kinase; domain 1 322 428 - -
Sebi348g00038 664 FunFam pollen receptor-like kinase 1 323 428 - -
Sebi348g00038 664 MobiDBLite consensus disorder prediction 237 261 - -
Sebi348g00038 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 629 IPR046959 -
Sebi348g00038 664 MobiDBLite consensus disorder prediction 237 252 - -
Sebi348g00038 664 FunFam Nuclear pore complex protein NUP107 26 177 - -
Sebi348g00038 664 Gene3D Ribonuclease Inhibitor 84 227 IPR032675 -
Sebi348g00038 664 SUPERFAMILY Protein kinase-like (PK-like) 357 624 IPR011009 -
Sebi348g00038 664 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 429 634 - -
Sebi348g00038 664 ProSiteProfiles Protein kinase domain profile. 353 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi348g00038 664 SUPERFAMILY L domain-like 43 215 - -
Sebi348g00038 664 Gene3D Ribonuclease Inhibitor 21 83 IPR032675 -
Sebi348g00038 664 Pfam Protein kinase domain 357 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi348g00038 664 CDD STKc_IRAK 359 627 - -
Sebi348g00038 664 Gene3D Transferase(Phosphotransferase) domain 1 429 641 - -
Sebi348g00038 664 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi348g00038 Sebi-Chr348 570185 572994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi348g00038 28 658 Receptor kinase-like Gene Family AT1G68400 64.275 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi348g00038 Pkinase 4.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi348g00038 - - qsa:O6P43_032719 876.315