Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi348g00034 ATGGCCACCACGCAAGCTAGTGGTGGCAGCGGCGGCGGCGTTGCCATAATGCCAGGCACTGTAACCTCCACGGATCCTTCCAGTTCGAGCACTTGCTCCAACACCTCCCTCCTCCTCCAATCGCCGATTCTCATATTCTCTTTGTTTCACAAAGCCATTAACTCTGAGCTCCAGTCCCTCCACCAAGCGGCCTTGGATTTCGTTTCCAACCACGATGATCCCTCTGACCTAAAATCCTTGTCCCACCGCTGTCACTTTCTTCGCACCATCTATAAGCACCACTGTAATGCCGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGTGTGAAGAATGTTGCAAGCGCGTATTTTTTGGAACATGAGGGGGAGGGTCTTCTTTTCAATCAGTTGTTCGAGCTGCTAAATTCCAATTTGCTAAATGAAGAGAGCTATCGAAGAGAATTAGCTTCTTGTACTGGAGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAACAGGTCTTCCCTTTGGTCATTGAGAAATTTTCATCTGAAGAGCAGGCATCATTAGTATGGCAATTTCTTTGTAGCATACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGCATCAGGATCTACTTAGGTGCTTGTGCACAATTATTCCCAAAGAGAAGCTCCTTCATCAGGTCATCTTTGGATGGATGGAGGGACTAAACATTAAATGCACAAACTGCACGCATGATACTAAGGTTCAATGGCAGGATGCTGGAACAAGCAATTTACCCAGTCATAATAATGAAAAGGAGTACTGTGACTGTGGACCTTCCAAAACTGTCAAAAGGAAATGGGTGGAGCTAAGTGAAGATCCTAACAATTCCACTTTATCATGTCCTTTAGATGAATTATTACTTTGGCATAAGGCTATAAAGCAAGAATTGAGTGATTTAGCTGAGACAGCTAGGAAGATGCACCTATCTGAAGAATTTTCTGACTTGTCTTCATTTAATGGGAGGCTTCAATTTATAACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTTCCCGCCATAAATTCAGAGCTGGATTTTTTCCAAAACCACACAAATGAAGAACTCCAATTTGACAATCTGAGGTGCCTGATAGAAGGTATCCAAAGTGCTGGAGCCAACCCCTCCTCCCCTGAGTTTTATATTAGGTTGAGCTCCCATACTGAACAAATAATGAAAACTGTACTGAAGCACTTTGAAAATGAGGAAGCTCAGGTTCTTCCACTTGCACGAAAGCTATTTAGCCACCAAAGGCAACGAGAATTACTTTATGAAAGCTTGTGCTTGATGCCCTTGAAATTGATCGAAAGCGTATTACCATGGTTAGTAGGATCACTTAGTGAAACAGAAGTTAGGTCGTTTCTTCAGAATATGTATATGGCAGCCCCGGCTTCAGATCATGCACTGGTTACCCTTTTTTCTGGTTGGGCATGCAACAGACATTCCAGAAACAGTTGCTTCTCTTCAAGTGTGATAGGTTTATGTCCTGCCAGGAGATTGATGGAGACGGAAAGCACTAGCCTATCATTTTGCATGTGTGAACCTTCATTCAGTCCCAATGAAAAATCTTCGCACGTTAAACAAGATGATGCAAATAGTGACATTGGACCAGTCAAGCATGGAAATCCAGAACCAAAGCAAGACAATGATGCTTCTAACTTGATGGTAACAAGAGAAACTCTTAACTCACCTAATAATCAGTCTTGCTGTGTCCCTGGATTAGGGGTGAACACAAATCATCTAGGAGGTGGTTCTTTTTCCCTAACAAAGTCTCTGCGAGCCTTATCTGATTGTCCATCTGCACCTTTCCTCAATTCCAGTCTTTTTATGTGGGAAACTGATGTAGTCTCTGTTGACAATCAATTTACAACAAGGCCTATTGATAACATATTTAAATTTCACAAAGCCATCCGTAAAGACTTGGAATATTTAGATGTTGAATCCGGAAAACTTAATGATTGTGATGATATTTTCATTCAGCAATTCACTGGTAGATTGTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGAATTAGAGTCAAAAGAGAATCTTCACAATGTGAGCCATTCTTACACTTTGGACCACCAGCAGGAAGATAAGTTATTTTTGGATATTTCTTCTGGACTCACCCAGCTTACTCGATTACATGAATTACTAAATAAAAGGATTTCGTCTGACCATCTAATCAACTGTTACCCTAATTATGCTGATTGCTCTGATACCATACAAAATTATAACGAGCTCTCTACAAAGATTCAGGGCATGTGCAAGTCTATCAGAGTGACACTAGATCAACATCTTCTTAGGGAGGAACTTGAATTATGGCCCTTGTTTGATAAACACTTTTCTGTGGAAGAACAAGATAAGATTGTTGGTCGTATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGTTGCCATGGGTAACTACTGCTCTCACACAAGATGAGCAAAACAAAATGATAGACACATGGAAACAGGCTACCAAAAACACTATGTTCAATGAGTGGCTTAATGAGTGGTGGGAAGGACCTGCTTCATCTTCAAATATCACTACACCTCGAGACCATTCACTAGGTACTGATGCCTATGAAGACTCAGAGCATAGCTTTCAAGCCTTCAGGCCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGAAAAACATATCTAATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGGAGGTGAATCTTCTAAATTAAAAGATTTGTTGGAAACTTCTCCTTCATTTCGTGATCCAGAGAAAAAATCCTTTGGTTGCGAACATTACAAAAGAAATTGTAAACTCCGTGCTGCCTGCTGTGGAAAGCTATTCACGTGTAGGTTCTGCCATGACAAAGTTAGCGACCATTCAATGGATAGGAAGGCTACGACTGAGATGATGTGCATGCGCTGCCTTCAAATACAGCCTGTTGGACCAGTTTGTGTAACACCTTCCTGTGGTCGTCTCTTAATGGCAAAGTACTACTGTAGTATTTGCAAATTTTTTGATGATGAAAGGACAGTTTATCATTGCCCTTTCTGCAATCTATGCCGTCTGGGAAAGGGACTTGGTGTTGACTTCTTTCATTGCATGCAGTTGCATCTGTCAGAGCTCTCCCTTGTGGTCATTTCATGCATTCCGCTTGCTTTCAGGCATATACATGCAGTCACTACATCTGTCCTATTTGTAGCAAATCTTTGGGGGATATGGCGGTTTACTTTGGCATGCTTGACGCTCTACTGGCTTCTGAGGAACTCCCAGAAGAATATCGGAATCGATATCAGGATATACTCTGTAATGACTGCCATAAGAAGGGGACTGCTCCATTCCATTGGCTATATCACAAATGTGGGTTTTGCGGATCTTACAACACAAGGTTAA 3585 0.4139 MATTQASGGSGGGVAIMPGTVTSTDPSSSSTCSNTSLLLQSPILIFSLFHKAINSELQSLHQAALDFVSNHDDPSDLKSLSHRCHFLRTIYKHHCNAEDQVIFPALDKRVKNVASAYFLEHEGEGLLFNQLFELLNSNLLNEESYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSSEEQASLVWQFLCSIPVKMMAEFLPWLASYISSDEHQDLLRCLCTIIPKEKLLHQVIFGWMEGLNIKCTNCTHDTKVQWQDAGTSNLPSHNNEKEYCDCGPSKTVKRKWVELSEDPNNSTLSCPLDELLLWHKAIKQELSDLAETARKMHLSEEFSDLSSFNGRLQFITEVCIFHSIAEDKVIFPAINSELDFFQNHTNEELQFDNLRCLIEGIQSAGANPSSPEFYIRLSSHTEQIMKTVLKHFENEEAQVLPLARKLFSHQRQRELLYESLCLMPLKLIESVLPWLVGSLSETEVRSFLQNMYMAAPASDHALVTLFSGWACNRHSRNSCFSSSVIGLCPARRLMETESTSLSFCMCEPSFSPNEKSSHVKQDDANSDIGPVKHGNPEPKQDNDASNLMVTRETLNSPNNQSCCVPGLGVNTNHLGGGSFSLTKSLRALSDCPSAPFLNSSLFMWETDVVSVDNQFTTRPIDNIFKFHKAIRKDLEYLDVESGKLNDCDDIFIQQFTGRLCLLWGLYRAHSNAEDDIVFPELESKENLHNVSHSYTLDHQQEDKLFLDISSGLTQLTRLHELLNKRISSDHLINCYPNYADCSDTIQNYNELSTKIQGMCKSIRVTLDQHLLREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTTALTQDEQNKMIDTWKQATKNTMFNEWLNEWWEGPASSSNITTPRDHSLGTDAYEDSEHSFQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKTYLIQNLMTSRWIASQQKSSQATGGESSKLKDLLETSPSFRDPEKKSFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLQIQPVGPVCVTPSCGRLLMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGVDFFHCMQLHLSELSLVVISCIPLAFRHIHAVTTSVLFVANLWGIWRFTLACLTLYWLLRNSQKNIGIDIRIYSVMTAIRRGLLHSIGYITNVGFADLTTQG 1194
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi348g00034 1194 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1104 - -
Sebi348g00034 1194 MobiDBLite consensus disorder prediction 959 988 - -
Sebi348g00034 1194 Gene3D nmb1532 protein domain like 648 877 - -
Sebi348g00034 1194 Gene3D nmb1532 protein domain like 41 193 - -
Sebi348g00034 1194 Gene3D nmb1532 protein domain like 308 451 - -
Sebi348g00034 1194 Pfam CHY zinc finger 994 1069 IPR008913 GO:0008270
Sebi348g00034 1194 CDD Hr-like 656 812 - -
Sebi348g00034 1194 CDD Hr-like 45 173 - -
Sebi348g00034 1194 ProSiteProfiles Zinc finger CTCHY-type profile. 1059 1121 IPR017921 -
Sebi348g00034 1194 MobiDBLite consensus disorder prediction 545 577 - -
Sebi348g00034 1194 FunFam Zinc finger protein BRUTUS 647 877 - -
Sebi348g00034 1194 Pfam Hemerythrin HHE cation binding domain 46 175 IPR012312 -
Sebi348g00034 1194 Pfam Hemerythrin HHE cation binding domain 652 813 IPR012312 -
Sebi348g00034 1194 SUPERFAMILY CHY zinc finger-like 987 1050 IPR037274 GO:0008270
Sebi348g00034 1194 MobiDBLite consensus disorder prediction 1 28 - -
Sebi348g00034 1194 ProSiteProfiles Zinc finger CHY-type profile. 987 1056 IPR008913 GO:0008270
Sebi348g00034 1194 MobiDBLite consensus disorder prediction 959 978 - -
Sebi348g00034 1194 CDD Hr-like 306 434 - -
Sebi348g00034 1194 SUPERFAMILY Zinc hairpin stack 1060 1100 IPR037275 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi348g00034 Sebi-Chr348 534593 544458 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi348g00034 41 1099 C2H2 Transcription Factor Family AT3G18290 59.387 0.0 1236
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi348g00034 K16276 - gmx:100783072 1774.21