LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi348g00034	ATGGCCACCACGCAAGCTAGTGGTGGCAGCGGCGGCGGCGTTGCCATAATGCCAGGCACTGTAACCTCCACGGATCCTTCCAGTTCGAGCACTTGCTCCAACACCTCCCTCCTCCTCCAATCGCCGATTCTCATATTCTCTTTGTTTCACAAAGCCATTAACTCTGAGCTCCAGTCCCTCCACCAAGCGGCCTTGGATTTCGTTTCCAACCACGATGATCCCTCTGACCTAAAATCCTTGTCCCACCGCTGTCACTTTCTTCGCACCATCTATAAGCACCACTGTAATGCCGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGTGTGAAGAATGTTGCAAGCGCGTATTTTTTGGAACATGAGGGGGAGGGTCTTCTTTTCAATCAGTTGTTCGAGCTGCTAAATTCCAATTTGCTAAATGAAGAGAGCTATCGAAGAGAATTAGCTTCTTGTACTGGAGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAACAGGTCTTCCCTTTGGTCATTGAGAAATTTTCATCTGAAGAGCAGGCATCATTAGTATGGCAATTTCTTTGTAGCATACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGCATCAGGATCTACTTAGGTGCTTGTGCACAATTATTCCCAAAGAGAAGCTCCTTCATCAGGTCATCTTTGGATGGATGGAGGGACTAAACATTAAATGCACAAACTGCACGCATGATACTAAGGTTCAATGGCAGGATGCTGGAACAAGCAATTTACCCAGTCATAATAATGAAAAGGAGTACTGTGACTGTGGACCTTCCAAAACTGTCAAAAGGAAATGGGTGGAGCTAAGTGAAGATCCTAACAATTCCACTTTATCATGTCCTTTAGATGAATTATTACTTTGGCATAAGGCTATAAAGCAAGAATTGAGTGATTTAGCTGAGACAGCTAGGAAGATGCACCTATCTGAAGAATTTTCTGACTTGTCTTCATTTAATGGGAGGCTTCAATTTATAACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTTCCCGCCATAAATTCAGAGCTGGATTTTTTCCAAAACCACACAAATGAAGAACTCCAATTTGACAATCTGAGGTGCCTGATAGAAGGTATCCAAAGTGCTGGAGCCAACCCCTCCTCCCCTGAGTTTTATATTAGGTTGAGCTCCCATACTGAACAAATAATGAAAACTGTACTGAAGCACTTTGAAAATGAGGAAGCTCAGGTTCTTCCACTTGCACGAAAGCTATTTAGCCACCAAAGGCAACGAGAATTACTTTATGAAAGCTTGTGCTTGATGCCCTTGAAATTGATCGAAAGCGTATTACCATGGTTAGTAGGATCACTTAGTGAAACAGAAGTTAGGTCGTTTCTTCAGAATATGTATATGGCAGCCCCGGCTTCAGATCATGCACTGGTTACCCTTTTTTCTGGTTGGGCATGCAACAGACATTCCAGAAACAGTTGCTTCTCTTCAAGTGTGATAGGTTTATGTCCTGCCAGGAGATTGATGGAGACGGAAAGCACTAGCCTATCATTTTGCATGTGTGAACCTTCATTCAGTCCCAATGAAAAATCTTCGCACGTTAAACAAGATGATGCAAATAGTGACATTGGACCAGTCAAGCATGGAAATCCAGAACCAAAGCAAGACAATGATGCTTCTAACTTGATGGTAACAAGAGAAACTCTTAACTCACCTAATAATCAGTCTTGCTGTGTCCCTGGATTAGGGGTGAACACAAATCATCTAGGAGGTGGTTCTTTTTCCCTAACAAAGTCTCTGCGAGCCTTATCTGATTGTCCATCTGCACCTTTCCTCAATTCCAGTCTTTTTATGTGGGAAACTGATGTAGTCTCTGTTGACAATCAATTTACAACAAGGCCTATTGATAACATATTTAAATTTCACAAAGCCATCCGTAAAGACTTGGAATATTTAGATGTTGAATCCGGAAAACTTAATGATTGTGATGATATTTTCATTCAGCAATTCACTGGTAGATTGTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGAATTAGAGTCAAAAGAGAATCTTCACAATGTGAGCCATTCTTACACTTTGGACCACCAGCAGGAAGATAAGTTATTTTTGGATATTTCTTCTGGACTCACCCAGCTTACTCGATTACATGAATTACTAAATAAAAGGATTTCGTCTGACCATCTAATCAACTGTTACCCTAATTATGCTGATTGCTCTGATACCATACAAAATTATAACGAGCTCTCTACAAAGATTCAGGGCATGTGCAAGTCTATCAGAGTGACACTAGATCAACATCTTCTTAGGGAGGAACTTGAATTATGGCCCTTGTTTGATAAACACTTTTCTGTGGAAGAACAAGATAAGATTGTTGGTCGTATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGTTGCCATGGGTAACTACTGCTCTCACACAAGATGAGCAAAACAAAATGATAGACACATGGAAACAGGCTACCAAAAACACTATGTTCAATGAGTGGCTTAATGAGTGGTGGGAAGGACCTGCTTCATCTTCAAATATCACTACACCTCGAGACCATTCACTAGGTACTGATGCCTATGAAGACTCAGAGCATAGCTTTCAAGCCTTCAGGCCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGAAAAACATATCTAATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGGAGGTGAATCTTCTAAATTAAAAGATTTGTTGGAAACTTCTCCTTCATTTCGTGATCCAGAGAAAAAATCCTTTGGTTGCGAACATTACAAAAGAAATTGTAAACTCCGTGCTGCCTGCTGTGGAAAGCTATTCACGTGTAGGTTCTGCCATGACAAAGTTAGCGACCATTCAATGGATAGGAAGGCTACGACTGAGATGATGTGCATGCGCTGCCTTCAAATACAGCCTGTTGGACCAGTTTGTGTAACACCTTCCTGTGGTCGTCTCTTAATGGCAAAGTACTACTGTAGTATTTGCAAATTTTTTGATGATGAAAGGACAGTTTATCATTGCCCTTTCTGCAATCTATGCCGTCTGGGAAAGGGACTTGGTGTTGACTTCTTTCATTGCATGCAGTTGCATCTGTCAGAGCTCTCCCTTGTGGTCATTTCATGCATTCCGCTTGCTTTCAGGCATATACATGCAGTCACTACATCTGTCCTATTTGTAGCAAATCTTTGGGGGATATGGCGGTTTACTTTGGCATGCTTGACGCTCTACTGGCTTCTGAGGAACTCCCAGAAGAATATCGGAATCGATATCAGGATATACTCTGTAATGACTGCCATAAGAAGGGGACTGCTCCATTCCATTGGCTATATCACAAATGTGGGTTTTGCGGATCTTACAACACAAGGTTAA	3585	0.4139	MATTQASGGSGGGVAIMPGTVTSTDPSSSSTCSNTSLLLQSPILIFSLFHKAINSELQSLHQAALDFVSNHDDPSDLKSLSHRCHFLRTIYKHHCNAEDQVIFPALDKRVKNVASAYFLEHEGEGLLFNQLFELLNSNLLNEESYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSSEEQASLVWQFLCSIPVKMMAEFLPWLASYISSDEHQDLLRCLCTIIPKEKLLHQVIFGWMEGLNIKCTNCTHDTKVQWQDAGTSNLPSHNNEKEYCDCGPSKTVKRKWVELSEDPNNSTLSCPLDELLLWHKAIKQELSDLAETARKMHLSEEFSDLSSFNGRLQFITEVCIFHSIAEDKVIFPAINSELDFFQNHTNEELQFDNLRCLIEGIQSAGANPSSPEFYIRLSSHTEQIMKTVLKHFENEEAQVLPLARKLFSHQRQRELLYESLCLMPLKLIESVLPWLVGSLSETEVRSFLQNMYMAAPASDHALVTLFSGWACNRHSRNSCFSSSVIGLCPARRLMETESTSLSFCMCEPSFSPNEKSSHVKQDDANSDIGPVKHGNPEPKQDNDASNLMVTRETLNSPNNQSCCVPGLGVNTNHLGGGSFSLTKSLRALSDCPSAPFLNSSLFMWETDVVSVDNQFTTRPIDNIFKFHKAIRKDLEYLDVESGKLNDCDDIFIQQFTGRLCLLWGLYRAHSNAEDDIVFPELESKENLHNVSHSYTLDHQQEDKLFLDISSGLTQLTRLHELLNKRISSDHLINCYPNYADCSDTIQNYNELSTKIQGMCKSIRVTLDQHLLREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTTALTQDEQNKMIDTWKQATKNTMFNEWLNEWWEGPASSSNITTPRDHSLGTDAYEDSEHSFQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKTYLIQNLMTSRWIASQQKSSQATGGESSKLKDLLETSPSFRDPEKKSFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLQIQPVGPVCVTPSCGRLLMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGVDFFHCMQLHLSELSLVVISCIPLAFRHIHAVTTSVLFVANLWGIWRFTLACLTLYWLLRNSQKNIGIDIRIYSVMTAIRRGLLHSIGYITNVGFADLTTQG	1194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi348g00034	1194	PANTHER	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	695	1104	-	-
	Sebi348g00034	1194	MobiDBLite	consensus disorder prediction	959	988	-	-
	Sebi348g00034	1194	Gene3D	nmb1532 protein domain like	648	877	-	-
	Sebi348g00034	1194	Gene3D	nmb1532 protein domain like	41	193	-	-
	Sebi348g00034	1194	Gene3D	nmb1532 protein domain like	308	451	-	-
	Sebi348g00034	1194	Pfam	CHY zinc finger	994	1069	IPR008913	GO:0008270
	Sebi348g00034	1194	CDD	Hr-like	656	812	-	-
	Sebi348g00034	1194	CDD	Hr-like	45	173	-	-
	Sebi348g00034	1194	ProSiteProfiles	Zinc finger CTCHY-type profile.	1059	1121	IPR017921	-
	Sebi348g00034	1194	MobiDBLite	consensus disorder prediction	545	577	-	-
	Sebi348g00034	1194	FunFam	Zinc finger protein BRUTUS	647	877	-	-
	Sebi348g00034	1194	Pfam	Hemerythrin HHE cation binding domain	46	175	IPR012312	-
	Sebi348g00034	1194	Pfam	Hemerythrin HHE cation binding domain	652	813	IPR012312	-
	Sebi348g00034	1194	SUPERFAMILY	CHY zinc finger-like	987	1050	IPR037274	GO:0008270
	Sebi348g00034	1194	MobiDBLite	consensus disorder prediction	1	28	-	-
	Sebi348g00034	1194	ProSiteProfiles	Zinc finger CHY-type profile.	987	1056	IPR008913	GO:0008270
	Sebi348g00034	1194	MobiDBLite	consensus disorder prediction	959	978	-	-
	Sebi348g00034	1194	CDD	Hr-like	306	434	-	-
	Sebi348g00034	1194	SUPERFAMILY	Zinc hairpin stack	1060	1100	IPR037275	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi348g00034	Sebi-Chr348	534593	544458	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi348g00034	41	1099	C2H2 Transcription Factor Family	AT3G18290	59.387	0.0	1236

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi348g00034	K16276		-	gmx:100783072	1774.21