Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi347g00028 ATGGATCGGCCTGCGATGGCTGTTGGGCCTGGAATGGATATGCCGATCATGCATGACAGCGATCGCTATGAACTTGTGCGCGATATTGGTTCTGGCAATTTCGGGGTAGCTAGGCTTATGAGGGACAAACAGACAGATGAACTTGTTGCTGTCAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAAATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTTATATTGACCCCATCACATTTGGCAATTGTAATGGAATATGCTTCTGGAGGAGAGCTATTTGAGAGAATATGCAATGCAGGGCGGTTCAGTGAGGATGAGCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGCAGTCCTGCTCCTCGTTTGAAGATCTGTGATTTTGGCTATTCAAAGTCCTCTGTGCTACATTCACAACCAAAATCTACAGTTGGTACCCCTGCATATATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGAAAGATTGCAGATGTGTGGTCCTGTGGTGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAGGAGCCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTATTCAATTCCTGACTATGTTCATATATCTCCTGAATGTCGTCATTTGATCTCAAGGATTTTTGTTGCTGATCCTGCTAAGAGAATAACCATTCCTGAGATTAAAATACATGAGTGGTTTTTGAAGAACCTTCCAGCTGATCTAATGGATGGGAATACAATGAACAACCAGTTTGAGGAACCTGATCAACCAATGCAAAGCGATGAAGAAATCATGAAGATAATTACTGAGGCTACAATTCCTGCAGCTGGAACTCAGTCTCTGAACCAGTATCTTACTGGTAGCTTGGATATCGATGACGACATGGAGGAGGACTTAGATACTGATCCTGACCTTGATATAGATAGCAGTGGAGAAATAGTTTATGCTATGTAA 1038 0.4152 MDRPAMAVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKQTDELVAVKYIERGEKIDENVQREIINHKSLRHPNIVRFKEVILTPSHLAIVMEYASGGELFERICNAGRFSEDEQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRITIPEIKIHEWFLKNLPADLMDGNTMNNQFEEPDQPMQSDEEIMKIITEATIPAAGTQSLNQYLTGSLDIDDDMEEDLDTDPDLDIDSSGEIVYAM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi347g00028 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Sebi347g00028 345 FunFam Serine/threonine-protein kinase SRK2A 117 269 - -
Sebi347g00028 345 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Sebi347g00028 345 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Sebi347g00028 345 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
Sebi347g00028 345 ProSiteProfiles Protein kinase domain profile. 23 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi347g00028 345 Gene3D Transferase(Phosphotransferase) domain 1 98 269 - -
Sebi347g00028 345 Pfam Protein kinase domain 23 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi347g00028 345 SMART serkin_6 23 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi347g00028 345 PANTHER SERINE/THREONINE KINASE 22 287 - -
Sebi347g00028 345 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi347g00028 Sebi-Chr347 1059458 1062843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi347g00028 16 284 CBL-interacting serine-threonine protein kinases AT4G24400 38.206 8.34e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Sebi347g00028 Pkinase 1.9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi347g00028 K14498 - qsu:112032862 628.632