Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00044 ATGCAAATGATGCCCGGTGACCCCTTTTCACTATCCACTTCAATTGGAGGCTTTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCCCCCTCCCGTTGCCAAGAAGAAGAGGAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTTTCCCCAAAGACCCTCATGGCCACCAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCATCGGAGGGGTCATAACCTTCCATGGAAGCTACGACAGAGGTCCAACAAGGAAATTCGGAAGAAGGTTTACATCTGTCCAGAGAAGAGCTGTGTCCACCATGACCCAGCCAGAGCACTCGGTGATCTCACAGGGATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAATACGCAGTCCAATCCGATTGGAAAGCACACACCAAAACCTGTGGCACTAGAGAATATAAGTGTGACTGTGGCACCCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTCTGTGATGCATTGGCGGAAGAGAGTGCAAGACTGACCTCAGTTTCTACAACAAATCTAAATTTCAAGAATGAAGAGGGTGTTGGTGTGATGGGGTCAGTATCACAGAGTGGTGGTTTAGCACAAGGACTAATTGCAGGGCAGGGTACTCTTCATCAAAATGTGGCTGGGATTCCACAGTTTAGTACTCCACATGGTTTTCGTTTAGATTTCAATGGAGGAATTAGCATGGGTGCAGAACAAAGGCCAAGCTTGTCACTATGGTTGAACCAGCAGGGGAACAATCCTGATGTGGGACCTAATAATTCAGGGCTTTATATGTCATCATCAAATTTGCCTGAGATGATGCAAATGGCATCAGCACAGGCTAATGCAGCTGCATTGATTGGGTCTTCATCAATGTTGTCTAATTTTGGAGTGGGTGGTTCTAATTCAAACACAGCAAACCTTTCCCTGTCTTCAGTTCCTATTGGGAAAAGAGGTGGAGAAGGTGGAACTGTGGATTTGGCATCTATTTATTCAGAGGGTCAAAACAAGCAATCAAAGGCTGCTACTCCTATGTCAGCCACTGCACTTTTGCAGAAAGCAGCTCAGATGGGTTCCACTAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGGGTAATGAACACTACCTCACCTTCCTCCCAAACTACTTCCATGCTGGGGAGTGGTGCTACGAATAATAACTTTCCCTCATTGACGCATTCATCAAACGGTTTTGATGAACTGGTGATGCAAAACAATAACGGGCATGAGGCGGTGAAATTGAAGGTACATCGTGCAGAACATAATTTGACAAGAGATTTTCTTGGTGTGAGTGGAGGTGGCCCTCAGTTTTTTCCTCAAGAGCTGGCAAAGTTTGCTTCATTAGGCTCACCAATGGGGTTGAGCCAATTCACAAGCAATCAGTGA 1503 0.4564 MQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPVAKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEIRKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVSTTNLNFKNEEGVGVMGSVSQSGGLAQGLIAGQGTLHQNVAGIPQFSTPHGFRLDFNGGISMGAEQRPSLSLWLNQQGNNPDVGPNNSGLYMSSSNLPEMMQMASAQANAAALIGSSSMLSNFGVGGSNSNTANLSLSSVPIGKRGGEGGTVDLASIYSEGQNKQSKAATPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNTTSPSSQTTSMLGSGATNNNFPSLTHSSNGFDELVMQNNNGHEAVKLKVHRAEHNLTRDFLGVSGGGPQFFPQELAKFASLGSPMGLSQFTSNQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00044 500 Gene3D Classic Zinc Finger 120 199 - -
Sebi346g00044 500 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Sebi346g00044 500 MobiDBLite consensus disorder prediction 1 49 - -
Sebi346g00044 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Sebi346g00044 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 475 IPR031140 -
Sebi346g00044 500 Gene3D Classic Zinc Finger 44 118 - -
Sebi346g00044 500 SMART c2h2final6 142 162 IPR013087 -
Sebi346g00044 500 SMART c2h2final6 66 88 IPR013087 -
Sebi346g00044 500 SMART c2h2final6 107 137 IPR013087 -
Sebi346g00044 500 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Sebi346g00044 500 MobiDBLite consensus disorder prediction 1 25 - -
Sebi346g00044 500 FunFam protein indeterminate-domain 12-like 45 113 - -
Sebi346g00044 500 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Sebi346g00044 500 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00044 Sebi-Chr346 669398 671183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00044 1 488 IDZ Gene Family AT5G03150 46.715 2.01e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi346g00044 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00044 K25870 - gmx:100801182 669.463