Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00043 ATGGCAACTGAACCTTCAGGCTCTTCCAAGGATAATAACAACCAAGGCGCTGGCACCATTGAAAATAGAGCTGATATCCCAATTCAAAAGGGTCTAGAGCCATCTGAAATAACTGAGGAACTCCCAAGTGGACAACATGGGACAAGGAAAAACATTATCTTGGAGACACCCACAAGAACACAAGAGGAAGCAAGAGAAGATTTTTTGAGAATAAACATGCCTCCAACTCCAACTCCATCTCCTTCTCCAAGAAGAGTGATTTTTACCCCATGTGGAACTCCAAGTCCTGGTTTTGCCAAAAGCAATGAATCCCCAGGTCCCTCATCATCAAAGAGTAGATCAACTATCAAAACCCTTCTCCCAAAACTCAGTTTTAAATTTCGCAACACAAATTCAGAGATTGAAAAGGCTGCTTTCCTAGCACTTGAAGGTTCAGCCACAGTGACAGCAAAAAAGCCTTTTCTTTCCAGAACATTATCCCGTATCAAATCTAATGGGAAGAAAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCAGGCTCAGTACATGGAGGGAACATGGCTTTTGCTTATCCAACAATAGCTGTTGAGAAAGGACTGCAATTACCAATTCATCGTTCCCGGTCAGTTCCTACTTTTACTGTAGAAGGTAATGCCACACCTTTAGGTGGCATGTTTCGTATAGTTAGGACCATACGACCATTAGATGAGAAAATTGCCACAACAACATCTGTGGCATCTCCAACTAATGATACTGTTGAGAATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCTAATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGGATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAAGTGCAGAACCTACCTGTCACTCTTTTACGAGTTCAAACTGCTCTAGGGAGCAGAGGTCAGCAAGCTGAGATTTCTCAATACAGGGTTTTGCAGGATGCCCCCATCCTTGTGGTTGTCAACATGCTGGCTTACTTTTGTTTTCTAGAGCAGCTCCTTGTTTCAAATATGGGATCTAGTGCTGTTGCCATGTCACTCCCATTTTCTTGTATACTAGGTCTTCTTGCAAGCATGACAGCTACAACAATGGTGAGGAGAAAACATGTTTGGATTTATGCAACTGTTCAGTTTGGTCTGGTAGTTCTCTCTGCACATCTTTTCTATTCATTGGCTCATATGCAAGCTGTTTTAGCTATCTTACTAGCTACATTTGCTGGATTTGGAGCTGTAATGTTTGGAGCTTCTATTCTTGTGGAGATTTTGAATTGGAGGAGGAGATGGCTTGCTCAGTTGAATCAACAGAATGGTTCTCAGGAGGGTATACCAGTACCACCTGGTCAATCATCTCCAGCAACTCACCAAGCTCAGATTAATTCTCAACATACTGCAAGTAATGTGGGAGACACTCCAGTGCAAATGAGCTGA 1548 0.4218 MATEPSGSSKDNNNQGAGTIENRADIPIQKGLEPSEITEELPSGQHGTRKNIILETPTRTQEEAREDFLRINMPPTPTPSPSPRRVIFTPCGTPSPGFAKSNESPGPSSSKSRSTIKTLLPKLSFKFRNTNSEIEKAAFLALEGSATVTAKKPFLSRTLSRIKSNGKKTSSLPVTPIAHSNPGSVHGGNMAFAYPTIAVEKGLQLPIHRSRSVPTFTVEGNATPLGGMFRIVRTIRPLDEKIATTTSVASPTNDTVENEDGGEDIPEEEAVCRICMVELGEGANTFKLECSCKGELSLAHQECAVKWFRIKGNRTCDVCKQEVQNLPVTLLRVQTALGSRGQQAEISQYRVLQDAPILVVVNMLAYFCFLEQLLVSNMGSSAVAMSLPFSCILGLLASMTATTMVRRKHVWIYATVQFGLVVLSAHLFYSLAHMQAVLAILLATFAGFGAVMFGASILVEILNWRRRWLAQLNQQNGSQEGIPVPPGQSSPATHQAQINSQHTASNVGDTPVQMS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00043 515 Pfam RING-variant domain 272 319 IPR011016 GO:0008270
Sebi346g00043 515 SMART ringv_2 271 320 IPR011016 GO:0008270
Sebi346g00043 515 ProSiteProfiles Zinc finger RING-CH-type profile. 264 326 IPR011016 GO:0008270
Sebi346g00043 515 MobiDBLite consensus disorder prediction 1 20 - -
Sebi346g00043 515 MobiDBLite consensus disorder prediction 95 115 - -
Sebi346g00043 515 SUPERFAMILY RING/U-box 268 323 - -
Sebi346g00043 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 327 IPR013083 -
Sebi346g00043 515 PANTHER OS02G0165000 PROTEIN 21 481 - -
Sebi346g00043 515 CDD RING_CH-C4HC3_MARCH 272 320 - -
Sebi346g00043 515 MobiDBLite consensus disorder prediction 477 515 - -
Sebi346g00043 515 MobiDBLite consensus disorder prediction 1 115 - -
Sebi346g00043 515 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00043 Sebi-Chr346 658652 662569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00043 269 326 C3H Transcription Factor Family AT2G37950 42.373 6.68e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00043 - - gmx:100787963 714.146