Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00041 ATGAAAGAAGATGTTCTTCGACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGGACTGGTATCAATTTTTCAGTATTTGAGGAGTCTGAGCTATTGAAAGTGGGTGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCAACCAAGACGGATCAAATGAAACTCCAACATCTGGTGGTACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATCTGCTTGTCTGAGCCTCGGGACACAACTGTCCTTCCCTGCCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAATCTGAGGAGTGA 561 0.4528 MKEDVLRPVTVNFQQGLGQKFRQPAGTGINFSVFEESELLKVGDMDVYPVAVKADASSGNQDGSNETPTSGGTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPESEE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00041 186 SUPERFAMILY RING/U-box 129 175 - -
Sebi346g00041 186 FunFam probable E3 ubiquitin-protein ligase LOG2 114 179 - -
Sebi346g00041 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 179 IPR013083 -
Sebi346g00041 186 MobiDBLite consensus disorder prediction 55 75 - -
Sebi346g00041 186 CDD mRING-HC-C3HC5_MGRN1-like 128 169 IPR045195 -
Sebi346g00041 186 PANTHER MAHOGUNIN 2 179 IPR045194 GO:0061630
Sebi346g00041 186 Pfam Zinc finger, C3HC4 type (RING finger) 128 174 - -
Sebi346g00041 186 SMART ring_2 130 168 IPR001841 -
Sebi346g00041 186 MobiDBLite consensus disorder prediction 57 75 - -
Sebi346g00041 186 ProSiteProfiles Zinc finger RING-type profile. 130 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00041 Sebi-Chr346 641932 642788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00041 2 149 C3H Transcription Factor Family AT3G09770 65.584 2.91e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00041 - - gmx:100783831 348.977