Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00038 ATGAAGTTTTCCCTTTTCGGTTGTTTCTCTGCATCGACCATAGACAAAAACAACAACGACTATGCAGAAGGAGAGAATGATGGAGGCTTTCGTGTATTCACATATAACCAATTGAAATCAGCCACTGGTAATTTTAATGAGAAGATTGGAGAAGGTGGATTTGGCTCTGTTTATAAGGGTAAGCTTAGAGATGGCACTTTTGTAGCAGTGAAAGTGCTTTCCATTGAGCTCGAATCCATGCGAGGAGAGAGGGAATTCGTTGCAGAATTAGCAACTCTCGCAAATATCAAGCACCAAAATCTAGCCAGCCTTCAAGGGTGTTGTGTGGAAGGTGCACACAGATACTTGGTCTATGATTACATGGAGAACAACACACTCTACCACGCTTTCTTAGGTTCGGAGGAAAGAAGGATGAGATTCAGTTGGGAAACAAGGAAGGACATATCCATAGGTGTGGCCCGGGGGCTTGTTGTTCTCCATGAGGAGTTGAGGCCCCATATCGTACATAGAGACATCAAAGCCAAAAATATACTTCTTGATCAGAATTTCACACCTAAAGTTTCAGACTTTGGTTTGGCAAAATTACTCAGAGATGAAAAATCTCACATCAGTACTCAAGTTGCAGGGACATTGGGTTATTTGGCTCCAGAGTATGCCAATTCTGGAAGGTTGACACGAAAATCAGATGTTTATAGCTTCGGAGTGTTACTTTTACAGATTATCAGTGGCCTAGCAGTTGTAGATGCTTATCAAGATATTGAGCGGTTCATTGTAGAGAAGGCGTGGGCAGCTTATAAGACTAATGATCTATTAAGAATGGTTGATCCTGTGCTTAATATGAACTTTCCTATGGAAGAAGCTATAAAATTCCTAAAGGTGGGGCTGCTTTGCGTGCAAGAAACAGCAAAGCTTCGGCCACGAATGTCAGAGGTTGTGGAAAAGTTGACCAATAAAATTGATATGAAAGACGTTCACATTGCAAAACCAGGATTTGTTGCTGACCTCAGGAACATCAAAATCAAACAAGCATCAGTACACTCACCACAGGAATCAAGTTCAGCTGGAGCAAGCTTTGGAAGCTCCATTTGGAGTATGGCCAATCTTGCTCGTTAA 1113 0.4187 MKFSLFGCFSASTIDKNNNDYAEGENDGGFRVFTYNQLKSATGNFNEKIGEGGFGSVYKGKLRDGTFVAVKVLSIELESMRGEREFVAELATLANIKHQNLASLQGCCVEGAHRYLVYDYMENNTLYHAFLGSEERRMRFSWETRKDISIGVARGLVVLHEELRPHIVHRDIKAKNILLDQNFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYANSGRLTRKSDVYSFGVLLLQIISGLAVVDAYQDIERFIVEKAWAAYKTNDLLRMVDPVLNMNFPMEEAIKFLKVGLLCVQETAKLRPRMSEVVEKLTNKIDMKDVHIAKPGFVADLRNIKIKQASVHSPQESSSAGASFGSSIWSMANLAR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00038 370 SMART serkin_6 43 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi346g00038 370 FunFam Putative LRR receptor-like serine/threonine-protein kinase 121 327 - -
Sebi346g00038 370 Gene3D Phosphorylase Kinase; domain 1 14 120 - -
Sebi346g00038 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 351 - -
Sebi346g00038 370 FunFam serine/threonine-protein kinase PBS1-like 12 120 - -
Sebi346g00038 370 CDD STKc_IRAK 49 317 - -
Sebi346g00038 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Sebi346g00038 370 SUPERFAMILY Protein kinase-like (PK-like) 28 323 IPR011009 -
Sebi346g00038 370 ProSiteProfiles Protein kinase domain profile. 43 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi346g00038 370 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Sebi346g00038 370 Gene3D Transferase(Phosphotransferase) domain 1 121 329 - -
Sebi346g00038 370 Pfam Protein kinase domain 46 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00038 Sebi-Chr346 620590 622203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00038 3 361 Receptor kinase-like Gene Family AT1G07650 45.879 7.86e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi346g00038 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00038 - - gmx:100813945 594.734