Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00036 ATGCAAACTCTCAATAGCCTCTCTCTGTTATCACTCCTTTTCCTCCTTCTGTTGTTCCATGGCGCAAACGGATTCGGCGCCATGGGACCAATCTCCGCTTCATTCGGAGAAGACGAGTTGTTCTGCGCCATCGATGCGAGTGGCAAGCAAGATGTTATTTGTTGGGGAAAGAACACCACATCGCCGCCACTTCTTCCGTCGTCTTCGCCTTATGTCAGCAACAACATCCCTGCCATGTCAGCACTCTCTGGCGGTGAAGGTTTCCTCTGCGGCATTTTAGCGAACACTTCACAAGCGTTTTGTTGGGGAGCTACCATGACCACGAGACCGAGCGTAGATCTCGTTCTCGTGCCTCCGGCGTACCGGAACATAGCTTACTCTAACATCGCCGCCGGCAAGGATCATGTCTGCGCCGTCAGGGGATCCTACTACGCCGATCACGATTCAGGGACCGTGGATTGCTGGGAAATCTCGAGAAACGTTAATAACACCTTGGTGGCGAGGCTTAACGGTTCGTTCAGCATCAATCTGGAGGTGAACAGGGTTGTTTCCGGCGAGGGGTTCACCTGCGGCGAGATGAGTTCCGGTGGGCTTGTTTGTTGGGGACCCGATTCGGAGAGCTTAGGAGTTTCCAACGTGTCGGAGAGTTTCGCGGTTTTGGCGGCGGGAAGGAACGCTGTTTGCGGTATTTCAAACTTTTCCGGCGATTTGAGGTGCTGGGGCGATCCGGGTTCGTTTTCGGATCCTCCACCGGTGGAGGTTCGGTTGGTGTCTCTCTCCGCAGGGGCACGTCATTTCTGCGGCGTTCGAGAGGATAACCACGTAGTGGAGTGTTGGGGTAGTTTGAATTCCTCTGTGGTTCCCAAAGGTTATGGCTTTATGGCTATTGCTTCTTCGGATAAAACCACTTGTGGTATCAGGGAAGATGATCTTCTTCTTGATTGCTGGTTGGTGAACGCATCTAAGCCTGATTTTGATCCTCCTTTGGAGCTTTCAAGCCCTGGTCTTTGCAGAGCTAGTTCGTGTGGTGTTGGGGAGTTTGCTTTCAATGTGAGTGTGCTCAATGAGCCAGATTTGACTAGCCTCTGTGTTAGACAGGATTTGAGGATTTGTTCACCTTGTGGGTCAAATTGTTCTCAAGGTTTCTTCTTGTCTAGCCCTTGTACTCAGAATGCGGATAGAGTTTGCACTGCTTGTTCTCTTTGCCAGAACAGCTCTTGTTGGGGTATTTGTGGACTTCACTCTTCAACAGGGTTGCATTGGCATCAATTACGTAGATGGGTTGTCATAATTGGGTCTTCAGCTTTGGGTTTCTTGTTGATTTTGACTTGTGGGTGTCTTTTTCCGCGTTTGGTAGCCAAAAGAAAAACACAAGGGCAAGGGACAAAGAAACAGTCCAAGTCTTGCATAGGAAAACCGGAACAGGAGGATGATGTGAATGTTGGTCTTCATTCTTCTCCTTCTGTTGCTTCCTGTCCTGGGGTGCCTCAGGTTTTCAGACTTACAGAGCTGAAAGATGCTACTAATGGGTTCAAGGAGTTTAATGAGCTTGGGAGGGGAAGTTATGGCTTTGTTTACAAAGCTGCTTTGGCGGATGGTAGGGTAGTTGCTGTTAAGAGAGCAAATGCTGCCACAATAATACACACCAACAACCGTGACTTTGAAATGGAGTTGGAAATCCTATGCAAAATTCGTCACTGTAATATTGTTAACTTGTTGGGTTATTGTGCTGAGATGGGAGAGAGGTTGCTTGTTTATGAGTACATGCCTCATGGGACACTTTATGATCACCTTCATGGTGGCCTTTCTCCTCTTAATTGGAGCCTCAGGCTCAAGATAGCCATGCAGGTTGCAAAGGGCCTTGAGTATCTTCACAAGGAACTATTGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCAAACATTCTTTTAGATTCAGAGTGGGGGGCTAGAATTTCAGACTTTGGACTTCTTACTTCAAGTGACAATGATCTTAAAGGGGACCTTGAAAGCGATGTTTACAATTTTGGGATTGTATTACTTGAGATTCTAAGTGGAAGAAAGGCTTGTGACAGAGATTTTACTCCACCTAATGTGGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGGAAAGCAGCTGCCATAATTGATCGTTATGTGGCTCTTCCAAGAAATGTTGAACCTTTGCTTAAACTTGCTGATATAGCAGAGCATGCTGTGAGAGAGAATCCAAGTGAGCGTCCACCTATGTCAGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGACGGTTTGATCTTCTAG 2304 0.474 MQTLNSLSLLSLLFLLLLFHGANGFGAMGPISASFGEDELFCAIDASGKQDVICWGKNTTSPPLLPSSSPYVSNNIPAMSALSGGEGFLCGILANTSQAFCWGATMTTRPSVDLVLVPPAYRNIAYSNIAAGKDHVCAVRGSYYADHDSGTVDCWEISRNVNNTLVARLNGSFSINLEVNRVVSGEGFTCGEMSSGGLVCWGPDSESLGVSNVSESFAVLAAGRNAVCGISNFSGDLRCWGDPGSFSDPPPVEVRLVSLSAGARHFCGVREDNHVVECWGSLNSSVVPKGYGFMAIASSDKTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRASSCGVGEFAFNVSVLNEPDLTSLCVRQDLRICSPCGSNCSQGFFLSSPCTQNADRVCTACSLCQNSSCWGICGLHSSTGLHWHQLRRWVVIIGSSALGFLLILTCGCLFPRLVAKRKTQGQGTKKQSKSCIGKPEQEDDVNVGLHSSPSVASCPGVPQVFRLTELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIAMQVAKGLEYLHKELLPPIVHKDLKSSNILLDSEWGARISDFGLLTSSDNDLKGDLESDVYNFGIVLLEILSGRKACDRDFTPPNVVEWAVPLIKQGKAAAIIDRYVALPRNVEPLLKLADIAEHAVRENPSERPPMSDIASWLEQIVKDGLIF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00036 767 FunFam Serine/threonine-protein kinase-like protein CCR1 589 665 - -
Sebi346g00036 767 SMART serkin_6 511 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi346g00036 767 Pfam Protein tyrosine and serine/threonine kinase 515 662 IPR001245 GO:0004672|GO:0006468
Sebi346g00036 767 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Sebi346g00036 767 Gene3D Phosphorylase Kinase; domain 1 481 588 - -
Sebi346g00036 767 Gene3D Transferase(Phosphotransferase) domain 1 666 764 - -
Sebi346g00036 767 Gene3D Transferase(Phosphotransferase) domain 1 589 665 - -
Sebi346g00036 767 Gene3D - 28 161 IPR009091 -
Sebi346g00036 767 Gene3D - 162 289 IPR009091 -
Sebi346g00036 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Sebi346g00036 767 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 341 396 IPR001368 GO:0005515
Sebi346g00036 767 SUPERFAMILY RCC1/BLIP-II 39 282 IPR009091 -
Sebi346g00036 767 ProSiteProfiles Protein kinase domain profile. 511 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi346g00036 767 FunFam serine/threonine-protein kinase-like protein CCR1 480 588 - -
Sebi346g00036 767 SUPERFAMILY Protein kinase-like (PK-like) 486 758 IPR011009 -
Sebi346g00036 767 FunFam Serine/threonine-protein kinase-like protein CCR1 666 764 - -
Sebi346g00036 767 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 10 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00036 Sebi-Chr346 579668 581971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00036 9 759 Receptor kinase-like Gene Family AT3G59420 30.958 3.75e-111 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Sebi346g00036 PK_Tyr_Ser-Thr 3.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00036 - - gmx:100802259 1253.43