Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00022 ATGACGACTCGAATAGCGCCAGGTGTCGGAGCAAATTTGCTGGGTCAGCACTCGGCAGAGAGGAATCAAGATGCTACTGCGTACGTTGGCAACCTTGACCCTCAGGTAACCGAGGAGTTATTGTGGGAGCTATTTGTTCAGGCAGGTCCCGTGGTTAATGTCTATGTTCCAAAGGACAGAGTGACCAACCAACATCAAGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAACTGTATGGAAAACCAATACGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGTATCCAGCTAGTGTGATATGCTAA 453 0.4371 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKYPASVIC 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00022 150 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 143 - -
Sebi346g00022 150 CDD RRM1_SF3B4 28 100 IPR034158 -
Sebi346g00022 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Sebi346g00022 150 SMART rrm1_1 26 99 IPR000504 GO:0003723
Sebi346g00022 150 Gene3D - 106 142 IPR012677 -
Sebi346g00022 150 Gene3D - 16 105 IPR012677 -
Sebi346g00022 150 FunFam Splicing factor 3b subunit 4 16 109 - -
Sebi346g00022 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 139 IPR000504 GO:0003723
Sebi346g00022 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Sebi346g00022 150 SUPERFAMILY RNA-binding domain, RBD 25 139 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00022 Sebi-Chr346 360749 362093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00022 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 33.735 1.37e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00022 K12831 - cave:132166171 286.96