Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00021 ATGGATTCAAAGGAGAAATCAGAAGAGGTGGACAGGTGTTTGGATCCTCAACTATGGCATGCCTGTGCAGGTGGGATGGTGCAGATGCCAGCAGTGAACACTAAGGTGTACTATTTCCCTCAGGGCCACGCTGAACATGCATGTGGACCTGTCAACTTCAGGAATTGCCCCAAGGTTCCACCTTTGGTTCCATGCAGGGTGGCTTCTATCAAATACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAGCTTAGGCTTGTTCCTTTGAATAGCAATGATGCTGATTATGACCGTGATGTTGTTGGAGGGATTAATGGGCCTGAAACTCAGGACAAGCCTCTTTCATTTGCAAAGACCTTGACCCAATCAGATGCTAACAATGGTGGGGGTTTTTCTGTTCCTAGGTACTGTGCAGAGACAATTTTCCCTCGTTTGGACTATTCTGCGGACCCTCCTGTTCAAAACATTCTTGCTAAGGATGTTCATGGTGAGACATGGAAATTCAGGCACATTTATAGGGGCACGCCAAGGAGGCACCTGTTGACTACTGGTTGGAGTACTTTTGTCAATCACAAGAAGCTTATTGCAGGGGACTCTATTGTGTTCTTGAGAGCAGAAAATGGGGATCTCTGTGTTGGAATTCGAAGAGCCAAAAAGGGTATTGGTGGTGGACCTGAGGTTGGGTGGAATCCTGCTGGAGGAAACTGTCCTGTGCCTTATGGTGGATTGCCAGCCATTTTGAGAGAGGATGATAACAGAATGCTGAGAAATAGTAACAGTAATGGTTTGAACCCAAGTGGTGGTATGATGGGGAGGGCAAAAGTGAGGCCAGAAGCTGTTATTGAAGCTGCAACTCTTGCTGCCAATAAGCAACCTTTTGAGGTTGTTTACTACCCTAGGGCTAGTACTCCAGAGTTTTGTGTGAAGGCCTCATTAGTTGAAGCTTCACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGACTCCTCACGGATAAGTTGGTTTATGGGAATTGTATCTTCAGTTCATGTTGCCGATCCCCTTCTCTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGTCCTTGGTTGGTTGAGTTGGTAGCAAATATTCCTCCTATCAACCTTTCCCCTTTCTCACCACCAAGGAAGAAATTGAGATTGCCCCAACATCCAGATTTCCCCCTTGATGGCCAGATTCCCATGCCAACATTTTCCAGCAACCCTCTAGGTCCCGGCAACCCATTTGTTTGTCTACCCGAAAGTACTCCTGCAGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAATAAAATGCAGTCAGGTCTATTTCCGGCTGGTTTCCCGCCTCTTGATCACGCAGCTACACCAACGAGTATCTCCAATAACCAACTATTGCAAAAGCCAACCATGAGTGAGAGTGTCTCTTGCTTACTATCCATGGCAAGTTCTAATCAGTCTCCAAAGAAACCAGATGATGAGAAGACACCCCACCAGCTTGTGCTTTTCGGCCAAAAAATTCTCACTGAGCAACAGATCTCTCTGAGCAGCTCTGGTGATACAGTCTCCCCAGTTCTAACTGGAAATTGTTCCTCAGATGGAAATGCTGATAAAGTGACTAATTTTTCTGATGGTTCTGGTTCTGCTCTTCATCACGAACGCTCCTCTTGTGAGAGGTTCCAATGGTATAGAGATAACCGCCAAGAAACTGAGGCTGGTTTAGAGATTGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGGACAATTAACCTCTCATTGCTTGGATCTTATGATGAACTGTTCAGAAAATTGGCAGACATGTTTGGCATAGAAAAATCTGAGATGCTAAGTCATGTGCTCTACCGAGATATAACAGGAGCAGTCAAACACATTGGAGATGAACCTTTCAGTAACTTTGCAAGAACAGCGAGGAGGTTGACTATTCTAATGGATTCTAGCAGCGACAATGTAGGAGTGTAG 2079 0.457 MDSKEKSEEVDRCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGPVNFRNCPKVPPLVPCRVASIKYMADPETDEVYAKLRLVPLNSNDADYDRDVVGGINGPETQDKPLSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEVGWNPAGGNCPVPYGGLPAILREDDNRMLRNSNSNGLNPSGGMMGRAKVRPEAVIEAATLAANKQPFEVVYYPRASTPEFCVKASLVEASLQIRWCSGIRFKMAFETEDSSRISWFMGIVSSVHVADPLLWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVANIPPINLSPFSPPRKKLRLPQHPDFPLDGQIPMPTFSSNPLGPGNPFVCLPESTPAGMQGARHAHYGLSLSDLHLNKMQSGLFPAGFPPLDHAATPTSISNNQLLQKPTMSESVSCLLSMASSNQSPKKPDDEKTPHQLVLFGQKILTEQQISLSSSGDTVSPVLTGNCSSDGNADKVTNFSDGSGSALHHERSSCERFQWYRDNRQETEAGLEIGHCKVFMESEDVGRTINLSLLGSYDELFRKLADMFGIEKSEMLSHVLYRDITGAVKHIGDEPFSNFARTARRLTILMDSSSDNVGV 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00021 692 ProSiteProfiles PB1 domain profile. 606 689 IPR000270 GO:0005515
Sebi346g00021 692 Gene3D - 321 394 - -
Sebi346g00021 692 CDD B3_DNA 116 217 IPR003340 GO:0003677
Sebi346g00021 692 FunFam Auxin response factor 115 219 - -
Sebi346g00021 692 FunFam Auxin response factor 322 395 - -
Sebi346g00021 692 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Sebi346g00021 692 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi346g00021 692 Gene3D - 115 219 IPR015300 -
Sebi346g00021 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi346g00021 692 SMART B3_2 117 219 IPR003340 GO:0003677
Sebi346g00021 692 SUPERFAMILY DNA-binding pseudobarrel domain 111 218 IPR015300 -
Sebi346g00021 692 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Sebi346g00021 692 Gene3D - 605 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00021 Sebi-Chr346 330188 332930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00021 10 692 B3 DNA Binding Superfamily AT4G30080 58.083 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi346g00021 B3 5.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00021 - - gmx:100796522 1169.45