LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi346g00017	ATGGCTTCTAATATATCAAGATCTGTAAGATTTCATGATGATGTTGAAACAGAGAAGTTAAAGAAAAGCCAAGAAGATCACTTGTCAATGCTAGCCTATGAGATGAGTGATGAACAGAAGCTTGGAAATGATGAAGATGAAATAGGGAAGTCATTGGATGGAAGAGAACTTTCCAGGGTTTTTTCTGAGGATTATGATGCAGCAGAGATATTGATATTGGATCCTAGGGGACCAAGAATTTATGTTAGGTTTCAAACTGCTTATATAGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAGATTGCATCAAAGTACTTACGTAGAGACTTTTGGTTTGATCTAATGGCTGCCCAACCACTTCCACAGGTACTGATTTGGGCTGTAATTCCAAGTCTAAAGGGGTCACAAATGATTGCTTCAAGGCAAATTTTGCGCCTTGCTACCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTATCTTCTGAAATCATCAAGGCAAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATTTGACTCTCTATATGCTTGCAAGTCATGTTTTAGGATCCTCTTGGTACCTGTTATCCATTGAACGGCAGGATGAATGTTGGAAGAAGGCTTGCACACTTCAGTACCCACATTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAGATAGGACTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTCTGTGATCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGCTGATGCTCTCACTATGAAAATTACCAGCTCAAAATTCTTCAACAAATACTATTACTGTCTTTGGTGGGGACTGAGGAATCTAAGCTCTGTAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTTTGCGGCTAGAAGAATGGAGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAACTCCCCCATTACCTGAAGCAAAATGTGCGACGCCATGACCAATTCAGATGGGTAGCTACAAGGGGAGTAGATGAGGAAGCTATTCTAAGAGACCTTCCTGTGGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAGGTACCACTATTTGATCAGATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGTTGAAGCCTTCTCTGTGCACCCCAGGCACATGCCTAGTTCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATTGTTAGAGGACGCTTAGATTCTTGTACCACCAATGGTGGCAGAACTGGGTTCTTTAACTCATGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTTTTGCCATGGGCCTTAGACCCTCGTCCAATAGTTGTCCTTCCTTCCTCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCTTTTGCACTCATTGCTGAGGACTTGAAGTTTGTGGCAGCACAATTCCGCAGGTTACACAGCAAACAACTTAGGCACACATTTAGGTTCCACTCCCATCAATGGAGAACATGGGCTGCATGCTTTATACAAGCAGCTTGGTTCAGATATAAAAGAATGAAAGAGACAATTGAGCTCAAGAGAAAGGAGGATCTGATGATGGCTTATGTACCTGGAATTGGCAATGAACATTTCTCTGCTCCTCTGCAGGGCCCAATGGGCTCAAGTTTTTCAATGTATGCTGCAAAAATCACAGCTAGCCCAAGGAAAGGTAGGAGCTTGAGATATGGTTCTGAACTAGACATTCTTGGGGCATTGAGGAAGCCCCTTGAACCAAACTTCAATGATGATGATATTTGA	1950	0.4246	MASNISRSVRFHDDVETEKLKKSQEDHLSMLAYEMSDEQKLGNDEDEIGKSLDGRELSRVFSEDYDAAEILILDPRGPRIYVRFQTAYIAPSSRVSGRGELIIDSSKIASKYLRRDFWFDLMAAQPLPQVLIWAVIPSLKGSQMIASRQILRLATIFQYLLRLYLIYPLSSEIIKANGVMMEKAWAGAAYNLTLYMLASHVLGSSWYLLSIERQDECWKKACTLQYPHCQYHYLDCQSIGDPDRTAWFRSSNLSGLCDQNSDFFQFGIFADALTMKITSSKFFNKYYYCLWWGLRNLSSVGQNLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTERWMHHRQLPHYLKQNVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDPVNEMLFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPIVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETIELKRKEDLMMAYVPGIGNEHFSAPLQGPMGSSFSMYAAKITASPRKGRSLRYGSELDILGALRKPLEPNFNDDDI	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi346g00017	649	Pfam	Ion transport protein	102	344	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Sebi346g00017	649	SUPERFAMILY	cAMP-binding domain-like	347	539	IPR018490	-
	Sebi346g00017	649	Gene3D	Helix hairpin bin	345	408	-	-
	Sebi346g00017	649	Gene3D	-	82	341	-	-
	Sebi346g00017	649	FunFam	Cyclic nucleotide-gated ion channel 1	415	533	-	-
	Sebi346g00017	649	ProSiteProfiles	cAMP/cGMP binding motif profile.	417	502	IPR000595	-
	Sebi346g00017	649	Gene3D	Jelly Rolls	415	535	IPR014710	-
	Sebi346g00017	649	PRINTS	EAG/ELK/ERG potassium channel family signature	80	89	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sebi346g00017	649	PRINTS	EAG/ELK/ERG potassium channel family signature	197	207	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sebi346g00017	649	PRINTS	EAG/ELK/ERG potassium channel family signature	286	303	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sebi346g00017	649	PRINTS	EAG/ELK/ERG potassium channel family signature	312	323	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sebi346g00017	649	PRINTS	EAG/ELK/ERG potassium channel family signature	380	387	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sebi346g00017	649	PRINTS	EAG/ELK/ERG potassium channel family signature	330	339	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Sebi346g00017	649	SMART	cnmp_10	417	548	IPR000595	-
	Sebi346g00017	649	CDD	CAP_ED	417	548	IPR000595	-
	Sebi346g00017	649	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	79	603	-	-
	Sebi346g00017	649	SUPERFAMILY	Voltage-gated potassium channels	107	339	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi346g00017	Sebi-Chr346	230165	234839	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi346g00017	79	647	Ion Channels	AT2G28260	65.026	0.0	785

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi346g00017	K05391		-	gmx:100815543	1050.81