Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00002 ATGAATTATGGGTGGCATAAGGAAGGGAATAATTTATCAAGATGGGTGGTTCTGGTTCCGACAGTATTTGGTGTCTGTAAATTGAGTAATGTGGATGAATTTGTACCTTCTCTTCAAGATGAAGTAATGGAAGTTGAGCACTTGCTAGCAGAACCTAGAAATGATCATGTATCAGTGGATGGCATATTGTATCTTAATGAGGAGAACAAAGGGAAATGCTATGATACTGAAAATCTTTCCAGTGGATTTGAATTTGGTTTAAAATCAAGCTGTTTGGATTCTCATACAACTTTGAATGGGAATGATGATTTAGAACTGGAGGTCCTTGACGGATTGCTCGATGATGTTGAAATTGATGATCTTGAGCGAACTGATGGTTTCTCCAGTGCGTGTGGAGAGTATTTTTTGGATTTTGAATTTGCCAACAAAGATGAGGTACTAGGCTCTGGTCCTTGTGAAGGCTCACTTTTGCAAAACTCAAGTTCAGAAAGTCATTCTTCAGGATTAAGTTCAGAATCAACAAAAGCACCCATTGCACAATCTGAATGCAAAAATGATTCTCTAGATGAGACAGTAAGCTACAAATCACATGGTGCCTTCAGGAACAGTCCAAGGCAGCCATCAAATGTAGATTGTATGTACAACATTTCACTTGATATACAACATCTGCATGGGTTAAATAACAATCGTCGTTTAGCTGGTGGTATATTGTCTTATGAGAAGGAAAACATTTCTGTTGAAAAATGCCAACCTGATGCACCTAGAGAGAAGAGATTCCGAAAGCCTACTCAGAGGTATATTGAAGAATTTTCAAATTTGAAGTCAAAGGAAAAAGTACCAACTACTCGTACAAAAAATAAACATTTGAGTGTGTCATCATGTAATGAACTTCATATAAGAATTAAAGCATTGAAAAAGATTCCAGGTGAGAAGTCTAGTAAGGGAAGTAGTAATGTGACGCATTCTGAGTTGCAAGTTCGCAAGGGCCGTCCAAAGCAAGAGAAACTTGAGTATGACAATGAGCCATTTCCCTTGGAGTCTAAGGGTGAATATGTGACACCAAAAAGTTCTAGGAGGAAAGATAGAAGAAAGCATCAGAGGATGTGGACTCTCTCTGAAGTGATGAAGTTAGTTGATGGGATATCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGTTTTTGTTTTCTTCTTCAAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGTAACCTTTTGAGAGCCAGTTCAGCACAGAAATTCAACAAGAAAGAGGCTGAGCAAAATGACGAGCTTGCTCTACGTCCGTTACCATCTAATGTGGTACGCCGTGTGTGTGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGCTCAAAGAAATCATGCGTTAGCCCAGTTGGTTCTTCTTCTGTGATTGCTAGTCAAAATAAAGGTTCTCCCGTAAGTCTTAGCAGAAGAGATGTACGTAGGAAGAAGAGTACTTAG 1500 0.3947 MNYGWHKEGNNLSRWVVLVPTVFGVCKLSNVDEFVPSLQDEVMEVEHLLAEPRNDHVSVDGILYLNEENKGKCYDTENLSSGFEFGLKSSCLDSHTTLNGNDDLELEVLDGLLDDVEIDDLERTDGFSSACGEYFLDFEFANKDEVLGSGPCEGSLLQNSSSESHSSGLSSESTKAPIAQSECKNDSLDETVSYKSHGAFRNSPRQPSNVDCMYNISLDIQHLHGLNNNRRLAGGILSYEKENISVEKCQPDAPREKRFRKPTQRYIEEFSNLKSKEKVPTTRTKNKHLSVSSCNELHIRIKALKKIPGEKSSKGSSNVTHSELQVRKGRPKQEKLEYDNEPFPLESKGEYVTPKSSRRKDRRKHQRMWTLSEVMKLVDGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKFNKKEAEQNDELALRPLPSNVVRRVCELAKIHPYPRQRGSKKSCVSPVGSSSVIASQNKGSPVSLSRRDVRRKKST 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00002 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 361 420 IPR017930 -
Sebi346g00002 499 Pfam Myb-like DNA-binding domain 369 416 IPR001005 -
Sebi346g00002 499 CDD SANT_TRF 367 417 - -
Sebi346g00002 499 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 20 472 - -
Sebi346g00002 499 MobiDBLite consensus disorder prediction 459 499 - -
Sebi346g00002 499 SUPERFAMILY Homeodomain-like 363 434 IPR009057 -
Sebi346g00002 499 Gene3D - 355 467 - -
Sebi346g00002 499 MobiDBLite consensus disorder prediction 306 365 - -
Sebi346g00002 499 ProSiteProfiles Myb-like domain profile. 361 416 IPR001005 -
Sebi346g00002 499 MobiDBLite consensus disorder prediction 157 184 - -
Sebi346g00002 499 MobiDBLite consensus disorder prediction 325 344 - -
Sebi346g00002 499 SMART sant 365 418 IPR001005 -
Sebi346g00002 499 MobiDBLite consensus disorder prediction 466 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00002 Sebi-Chr346 17101 23411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00002 369 422 Single Myb Histone (SMH) Gene Family AT1G17520 42.857 9.47e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi346g00002 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00002 - - aprc:113871152 645.966