Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi346g00001 ATGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTAATTGAGTCCTTGGGACTCCAGGCGGTGAGGGATTCCCTTGTTGGGACTGTAGAGAAGCGAGGTATATCTGGAGGGCAACGAAAACGTGTAAATGTAGGGATGGAGATGGTTATGGAGCCTTCTTTATTAATCTTAGATGAGCCTACAACTGGTCTGGACAGTGCATCTTCCACTTTACTACTTAAAGCACTTCGTCGTGAAGCTCTTGAAGGGGTAAACATTTGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATATTTCTAGCCAAAGGTGGCCTTACTGCATACCATGGTCCTGTCAAAAAAGTAGAAGAATACTTTGCTAGCATTGGAATTACTGTTCCTGATCGTGTGAATCCTCCAGACCATTTCATTGATATTCTGGAGGGTTTAGTGAAACCAAGTTCAGGTGTGACTCATCAACAACTTCCTGTCAGATGGATGCTCCATAATGGTTACCCAGTACCACCAGATATGCTTCATTTTGCTGATCAAATTGCTGCTTCATCATCTTCCTCAAATACAAATGATGCAACAAAGGGTACTGAAGAAGCTACTGACCAATCCTTTGCTGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAGATCCAACGAGATCACATAGAGGCGACCTTCTTAAAGACTAGGGACTTATCTAACCGAAGAACTCCTGGTGTAGCCCGGCAATATAGATACTACCTTGGGAGGGTTTGTAAGCAGCAGCTCCGAGAAGCAAAATCACAAGCAGTTGACTATCTCCTTTTATTAGTTGCTGGTTCTATCTTAGGAACTCTTACTAAAGTGAATGATGAAACATTTGGGTCTCTTGGATATACATATACTGTCATTGCTGTCTCTCTACTTTGCAAGATTGCAGCTCTCAGATCATTTTCTCTGGATAAGTTACAATACTGGAGGGAGAGTGCATCTGGAATCAGCAGTCTGGCTCATTTTTTGTCCAAAGACACACTTGATCTTTTCAATACAATCATCAAACCTGTGGTTTTTCTGTCCATGTTCTATTTCTTTAGCAATCCAAGGTCAAGCTTTGCAAGTAATTATGTGGTTTTGCTCTGCCTTGTGTACTGTGTGACTGGCATGGCTTATGGATTAGCAATTTATTTTGAGCCTGCTCCAGCTCAGCTGTGGGCAGTGCTTCTCCCTGTTGTTATGACTCTCATTGCGAACCAGAAAAGGGATACTACCTTTATGAAGATCCTAGTAAAGTTGTGCTACCCAAATTGGGCTCTGGAGGCCTTTATCATTGCAAATGCTGAAAGGTACACTGGGGTGTGGCTGATAACTCGTTGTAGTTCACTGATGAGTAGTGGTTATGACGTCAGTGATTGGCCTATATGTCTGGCTGTCCTCATTCTTTATGGTATAGTTGCCCGAGTTATATCCTACTTTTGTCTGGTGATCACCCAAAAGAAGTGA 1500 0.4207 MPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFASIGITVPDRVNPPDHFIDILEGLVKPSSGVTHQQLPVRWMLHNGYPVPPDMLHFADQIAASSSSSNTNDATKGTEEATDQSFAGEFWEDMKSNVQIQRDHIEATFLKTRDLSNRRTPGVARQYRYYLGRVCKQQLREAKSQAVDYLLLLVAGSILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESASGISSLAHFLSKDTLDLFNTIIKPVVFLSMFYFFSNPRSSFASNYVVLLCLVYCVTGMAYGLAIYFEPAPAQLWAVLLPVVMTLIANQKRDTTFMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMSSGYDVSDWPICLAVLILYGIVARVISYFCLVITQKK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi346g00001 499 Pfam ABC-2 type transporter 92 499 IPR043926 GO:0140359
Sebi346g00001 499 Pfam ABC transporter 10 62 IPR003439 GO:0005524
Sebi346g00001 499 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 486 - -
Sebi346g00001 499 Gene3D - 1 132 IPR027417 -
Sebi346g00001 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 121 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi346g00001 Sebi-Chr346 2817 7787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi346g00001 2 114 Calmodulin-binding Proteins AT2G36910 32.203 1.40e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi346g00001 - - gmx:100812387 900.197