Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi345g00021 ATGAAGAGACTCAACAACTCATCAGATTCTTCCGGTGCTCTCATGACAATCTGTCCATCAACAGACGAACACAGTCCAAGCAACAACCATGTGTATGGTAGAGAGTTCCAATCGATGCTGGATGGACTTGATGAGGAAGGGTGTATTGAAGAACCAGGACACCACTCCGAGAAGAAGCGTAGACTAAACATCGATCAAGTCAAGGCTTTAGAGAAGAACTTCGAGGTAGAAAACAAGCTTGAACCTGAGAGAAAAGTGAAGCTTGCACAAGAACTTGGGTTGCAGCCTAGACAAATTAAGGAACTGAAATCAAGGTTGCAAGAAGGGATTAACACTACAAGCGGTGTTTCGGTGAAGGAAGAGATAACGATGAAGCCTAATTCAGAAGACAACAAAATAATTGAAAGGAGTAAGAGTAAGAATAAGAGCAACAACCCTTCTGCTGAAAACTCTGTTCCTGGTTCAGAGTCAAAGGATCAATTGAATTACGACTGTTTCAAAAGCAACGATGATGTTGGAGCCGCTTCACTCTTCAAAGACGGTTCTTCTGACAGCGACTCAAGCGCAATCTTGAATGAAGACAATAGCCCCAAAGCAGCTATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGTTATCCCCTGATGATGAGTCTTCTCCATTGAAATTCAATTGCTCTATATTGTCATCGTCTTCCTTCATGAACTGCTTTCAATACCAGAAACCGTACCAGGCACAGTATGTGAAGATGGAAGAGCACAATTTCTTGAGTGCAGATGAGGCCTGCAATTTTTTCTCAGATGAGCAAGCACCGACCCTTCATTGGTACTGTCCAGACCAGTGGAGTTAA 855 0.4257 MKRLNNSSDSSGALMTICPSTDEHSPSNNHVYGREFQSMLDGLDEEGCIEEPGHHSEKKRRLNIDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQIKELKSRLQEGINTTSGVSVKEEITMKPNSEDNKIIERSKSKNKSNNPSAENSVPGSESKDQLNYDCFKSNDDVGAASLFKDGSSDSDSSAILNEDNSPKAAISSSGVLQNHNFLLSPDDESSPLKFNCSILSSSSFMNCFQYQKPYQAQYVKMEEHNFLSADEACNFFSDEQAPTLHWYCPDQWS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi345g00021 284 MobiDBLite consensus disorder prediction 117 160 - -
Sebi345g00021 284 SUPERFAMILY Homeodomain-like 40 100 IPR009057 -
Sebi345g00021 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 99 IPR045224 GO:0003700
Sebi345g00021 284 MobiDBLite consensus disorder prediction 140 160 - -
Sebi345g00021 284 Gene3D - 64 101 - -
Sebi345g00021 284 MobiDBLite consensus disorder prediction 1 33 - -
Sebi345g00021 284 ProSiteProfiles 'Homeobox' domain profile. 53 100 IPR001356 GO:0003677
Sebi345g00021 284 CDD homeodomain 58 100 IPR001356 GO:0003677
Sebi345g00021 284 SMART HOX_1 56 111 IPR001356 GO:0003677
Sebi345g00021 284 Pfam Homeodomain 58 100 IPR001356 GO:0003677
Sebi345g00021 284 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi345g00021 Sebi-Chr345 411232 412575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi345g00021 1 284 Homeobox Transcription Factor Family AT4G40060 38.138 7.34e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi345g00021 Homeodomain 9.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi345g00021 K09338 - qsa:O6P43_030496 345.895