Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi344g00089 ATGGCCGATACCAGGCGCTACGTTCCCTCCAATCAATTAGATATTGAGCAGATATTTTTAGAAGCACAACATCGATGGCTACGTCCAGCTGAAATTTGTGAAATTCTCGGGAATTACAAGAAATTTCGAATTTCCCCAGAGCCTGAACATATGCCACCAAGTGGTTCACTTTTCCTATTTGATCGGAAGGTGCTGAGATACTTTAGAAGGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACGGTGAGGGAAGCTCACGAGAGACTGAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGCACTTACTGGCTGCTTGAGGAGGAACTCTCACACATTGTTCTTGTCCATTATCGGGAAGTGAAGGGAACCAAGACAAATTTTAGATTTGCTAAAGAAAATGAAGAGTCTCTTCCTTCTGCTCAACAAACTTACAAAATTATGCCCAACACAGAAATAGATACTTCTTTATCTTCTAGTCTTCATCCACATAGTTACCAGGTTCCTTCACAAACTATAGATACAAGCATGAACAGTGCTCAAGCATCAGAATATGAAGAAGCTGAATCAGCATTTAATAACCATGCAAGTTCTGAATTCTACTCTTTCCTTGAGCTGCAACGCCCTGTTGTTGAAAAGATTAAAGCTCATATCACTGATTCTTACTGTCCTCTGCCACTCAAAGATGATCAAGAAAAGTTCCCTGTCATTCCTGGGGTGAATTATATCCCACTCAGTCAAGCGAATAAAATCAAAGACATTCATAATGTTGGATTGACATATGAACCCTCAAAATTCCTTGGCTTTTCATCGTGGGAATCTACATTAGAAAGTAATGCTGGAAGTCATCATGTCCCTTTTCAGCCTTCACTTCTTGAAACACAACCCAACAATACAGGAATCAATAGCAGTCCCTCTCAAGGAGATGAGATAATGGCACAACATTTTACCATCAGCATTGCTAAACAGCATGGGAATGGAAGTCTCATACAAGCTGAAGGAAGTTGGCAGGCTTCTGGATTTAATTCCAATTGGCCCATAGATGCTGTGTATTCAGGCTCACAATGCGAGGTTAGTTATAACAACTGTGAGCAGGAAGTTAATGGAGTTGATTTTCAAAAATCCATGGAACAGTGCCTTCTACACCCACACAAACTAAACAAGGTTCTTATGCAAAATGGCCCTCAAGAAAAACTTCTAGAAGCAAAAGACAAGCTAAAATCAGATCTAGAGGTCAATAGAAGCCTGGATGGAGTAGAAGACAGTTATCTCACTTTAAAGAAGACTCTGTTAGATGGATGTCCAGCAGAAGAGGGTCTTAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTAGAAGAATCAAATAAGCAATCCACTTCTGGTGCTTATTGGGATGCAGTTGAAAGTGAAAATGGGGTTGGCAGTACAGCTATTCCTTCCCAAGTGCACCTGGACACCTATGTACTGGATCCATCTGTTTCCAATGATCAGCTTTTTAGCATTATTGATTATTCCCCAAGCTGGACATTTGAAGGCTCAGAAGTTAAGGTTCTCATTTCAGGACGATTCTTAAGGACTCTACATGAAGCAGAACACTGTAAATGGTCATGCATGTTTGGCGAGGTAGAAGTGCAAGCAGAGATCATTGGGAATGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGCGAGAATTTGATTTCCGGGTTAACCATACTCAAGAAGTCAACACTGCAGGTGACAACAGAGGAAGCACGTCTGATACTTTTAAAATACGATTTGGAGAACTGTTGTCCCTGGAGCATGCCTTCCCTCAGTGTTTAGATTCAATTAGTGTGAGTGAGAAATCTCAACTGATAAGTAAAATCAGTTATTTGCTGATGAAGGATGATGATTGGGACAAGTTGCTGAAACTTACTCTAGAGAAAGATTTTTCTGCAGAAATTTTACAGGAGCAGCTGCTTGAAAATCTTCTGAAAGATAAGTTACTGGCATGGCTCCTTCAGAAAATAACTGAAGATGGGAAAGGCCCTAATGTATTAGATGATGGTGGCCAAGGTGTGCTTCATTTTTCAGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTCAACGTGAACTTTCGTGATATAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGCTTCCCTCATTTCTCTTGGCGCAGCACCCGGAGCACTGACTGATCCATGCCCTGAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCGGGATATCTTGCAGAATCTTTCCTAAGTGCACACCTCAAATCTCTTGATTTGAACAGGGATGTAGGAGAAAAATCTGGAGCAGTAGTCCAAAGAGTCCAAGAACAAAACACTGCTCAAGTTAATGATGAGGACCTGTCATATGAACTGTCATTGAAAGATTCACTGGCTGCAGTGTGCAATGCCACCCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTGCAATCATTCCAGAGAAAACAACTGAAGGAATATGGTGATGACAGATTTGGAATGTCTGATGAACATGCTCTTTCACTTGTAACAATGAATGTGAAACCACACAAGTCTGGACTACGCGATGAACCTGTCCATGCTGCTGCAACACGAATCCAGAACAAGTTCCGCGGTTGGAAGGGCAGAAAAGAATTTCTGATGATTCGACAACGAATAGTTAAAATTCAGGCTCATGTGAGAGGACACCAGGTTAGGAAAAACTGTGGGAAGATAATTTGGTCTGTTGGAATATTGGAGAAGGTTATATTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAATCGGAGGCAATTGCTGAAGGAACTATGGAACAAGGTGTATCTTCCACAGAGGATGACTATGATTTCTTAAGAGAAGGCAGGAAGCAAACAGAGAAAAGGTTGGAGAAAGCCCTGGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATATCATAGGCTGTTGAATGTAGTAACTGAGATCCAAGAAAATCAG 3201 0.4192 MADTRRYVPSNQLDIEQIFLEAQHRWLRPAEICEILGNYKKFRISPEPEHMPPSGSLFLFDRKVLRYFRRDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWLLEEELSHIVLVHYREVKGTKTNFRFAKENEESLPSAQQTYKIMPNTEIDTSLSSSLHPHSYQVPSQTIDTSMNSAQASEYEEAESAFNNHASSEFYSFLELQRPVVEKIKAHITDSYCPLPLKDDQEKFPVIPGVNYIPLSQANKIKDIHNVGLTYEPSKFLGFSSWESTLESNAGSHHVPFQPSLLETQPNNTGINSSPSQGDEIMAQHFTISIAKQHGNGSLIQAEGSWQASGFNSNWPIDAVYSGSQCEVSYNNCEQEVNGVDFQKSMEQCLLHPHKLNKVLMQNGPQEKLLEAKDKLKSDLEVNRSLDGVEDSYLTLKKTLLDGCPAEEGLKKLDSFNQWMSKELGDVEESNKQSTSGAYWDAVESENGVGSTAIPSQVHLDTYVLDPSVSNDQLFSIIDYSPSWTFEGSEVKVLISGRFLRTLHEAEHCKWSCMFGEVEVQAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNHTQEVNTAGDNRGSTSDTFKIRFGELLSLEHAFPQCLDSISVSEKSQLISKISYLLMKDDDWDKLLKLTLEKDFSAEILQEQLLENLLKDKLLAWLLQKITEDGKGPNVLDDGGQGVLHFSAALGYDWALEPTIVAGVNVNFRDINGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESFLSAHLKSLDLNRDVGEKSGAVVQRVQEQNTAQVNDEDLSYELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQLKEYGDDRFGMSDEHALSLVTMNVKPHKSGLRDEPVHAAATRIQNKFRGWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEAIAEGTMEQGVSSTEDDYDFLREGRKQTEKRLEKALARVKSMVQYPEARDQYHRLLNVVTEIQENQ 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi344g00089 1067 Gene3D - 927 974 - -
Sebi344g00089 1067 FunFam Calmodulin-binding transcription activator 2 514 611 - -
Sebi344g00089 1067 FunFam Calmodulin-binding transcription activator 2 927 975 - -
Sebi344g00089 1067 ProSiteProfiles Ankyrin repeat region circular profile. 755 780 - -
Sebi344g00089 1067 Pfam IPT/TIG domain 521 595 IPR002909 -
Sebi344g00089 1067 SMART iq_5 950 972 IPR000048 GO:0005515
Sebi344g00089 1067 SMART iq_5 927 949 IPR000048 GO:0005515
Sebi344g00089 1067 SMART ANK_2a 755 784 IPR002110 GO:0005515
Sebi344g00089 1067 SMART ANK_2a 794 823 IPR002110 GO:0005515
Sebi344g00089 1067 Coils Coil 1019 1039 - -
Sebi344g00089 1067 FunFam Calmodulin-binding transcription activator 2 684 831 - -
Sebi344g00089 1067 ProSiteProfiles IQ motif profile. 951 975 IPR000048 GO:0005515
Sebi344g00089 1067 SUPERFAMILY Ankyrin repeat 709 817 IPR036770 -
Sebi344g00089 1067 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Sebi344g00089 1067 Gene3D Immunoglobulins 513 610 IPR013783 -
Sebi344g00089 1067 Pfam IQ calmodulin-binding motif 929 948 IPR000048 GO:0005515
Sebi344g00089 1067 Pfam IQ calmodulin-binding motif 953 970 IPR000048 GO:0005515
Sebi344g00089 1067 Gene3D - 682 838 IPR036770 -
Sebi344g00089 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 922 977 IPR027417 -
Sebi344g00089 1067 SMART CG_1_2 18 136 IPR005559 GO:0003677
Sebi344g00089 1067 ProSiteProfiles IQ motif profile. 929 957 IPR000048 GO:0005515
Sebi344g00089 1067 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1065 - -
Sebi344g00089 1067 ProSiteProfiles Ankyrin repeat profile. 755 787 IPR002110 GO:0005515
Sebi344g00089 1067 SUPERFAMILY E set domains 521 606 IPR014756 -
Sebi344g00089 1067 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi344g00089 Sebi-Chr344 1059013 1066300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi344g00089 59 1067 CAMTA Transcription Factor Family AT2G22300 50.194 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi344g00089 CG-1 3.7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi344g00089 K21596 - gmx:100798875 1709.89