Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi344g00039 ATGGTTTCCATGTACACTCAGTATAGTTACAGTGTAGAAGCATTGGTGTTGTTCTGCCAGTTCAGGAGAAGTTGCAGTGAGACACCAAATGAATACATTTTAGCCAGTGTCATTAGAGCTTGTACGCAATTGGGTGGTCTCAACCAAGCTCTCCAGGTGCATTGTTTGGTTGTTAAGGGTGGATTTGTTCAAGATGTTTATGTGGGTACCTCTTTGATTGATTTTTATGCCAAGCATGGTTATATTGATAAAGCAAGTTTGCTTTTTGATGGCCTAGAAGTAAAAACCACTGTCACCTGGACTACAATTATAGCAGGTGTTCTCAATTCATGTGGTTCACTCCAGGCTCTAGAAAAAGGAAGACAAGTGCATGCTTATACTATCAAGGTCAATATTGATAATGATGATTTTGTGAAAAATGGTTTGATTGACATGTATGCCAAATGTGATTCCTTGACTAATGCAAGAAAAGTCTTTGACCTTATGGCTTCTATTAATGTTGTATCCTACAATGCAATGATAGAAGGATACTCAAGACAAGACAAGCTGTACGAAGCATTTGATCTTTTCCGGAAAATGAGGCTAAGTTTATTGCCACCAACTCTATTAACGTTTATGTACCACAAGAGAGGCATCTGGGCTATCAAGGCCAAAAACGGCGGCGTTTTACCTCGCCACGATCCCAAACCTAAACCTGAAGCTCCTGCTGAGAAACCACCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTCATCAACAAGCACAAGCCAAAACCCACTAAGCTCAGGGCTAGCATTACTCCCGGAACAGTGCTGATTCTTCTTGCTGGAAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAACAGCTTCCTTCTGGTTTGCTTCTTGTAACTGGTCCTTTTAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAATCCTATGTGATTGGCACATCAACCAAAGTGGATGTCCCTGCTGTTAATGTGGATAAATTTGATGACAAGTACTTTGCTAAGGAAGCCCAGGAAAAGAAGAAGAAAGGAGAAGGCGAGTTCTTTGAGGCTGAGAAGGAGGAGAAAAACGTGTTGCCCCAGGGGAAGAAAGATGACCAGAAAACAGTCGACTCTGCATTGGTAAAGGCCATTGAGAGTGTTCCAGACTTGAAGGCTTATCTGGGTGCCAGGTTTTCCCTTAAGGCAGGCATGAAGCCCCACGAGCTAGTCTTCTAG 1236 0.4231 MVSMYTQYSYSVEALVLFCQFRRSCSETPNEYILASVIRACTQLGGLNQALQVHCLVVKGGFVQDVYVGTSLIDFYAKHGYIDKASLLFDGLEVKTTVTWTTIIAGVLNSCGSLQALEKGRQVHAYTIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLMASINVVSYNAMIEGYSRQDKLYEAFDLFRKMRLSLLPPTLLTFMYHKRGIWAIKAKNGGVLPRHDPKPKPEAPAEKPPKFYPADDVKKPLINKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVPAVNVDKFDDKYFAKEAQEKKKKGEGEFFEAEKEEKNVLPQGKKDDQKTVDSALVKAIESVPDLKAYLGARFSLKAGMKPHELVF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi344g00039 411 MobiDBLite consensus disorder prediction 223 262 - -
Sebi344g00039 411 FunFam 60S ribosomal protein L6 265 349 - -
Sebi344g00039 411 Pfam PPR repeat family 166 205 IPR002885 -
Sebi344g00039 411 SUPERFAMILY Translation proteins SH3-like domain 265 351 IPR008991 -
Sebi344g00039 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Sebi344g00039 411 NCBIfam pentatricopeptide repeat 168 194 IPR002885 -
Sebi344g00039 411 FunFam Pentatricopeptide repeat-containing protein 117 208 - -
Sebi344g00039 411 Gene3D Tetratricopeptide repeat domain 1 107 IPR011990 GO:0005515
Sebi344g00039 411 Gene3D Tetratricopeptide repeat domain 108 214 IPR011990 GO:0005515
Sebi344g00039 411 PANTHER 60S RIBOSOMAL PROTEIN L6 205 411 IPR000915 GO:0003735|GO:0005840|GO:0006412
Sebi344g00039 411 MobiDBLite consensus disorder prediction 223 254 - -
Sebi344g00039 411 CDD KOW_RPL6 259 411 IPR041997 -
Sebi344g00039 411 Pfam PPR repeat 70 91 IPR002885 -
Sebi344g00039 411 Pfam PPR repeat 140 165 IPR002885 -
Sebi344g00039 411 Coils Coil 340 360 - -
Sebi344g00039 411 Pfam Ribosomal protein L6e 304 411 IPR000915 GO:0003735|GO:0005840|GO:0006412
Sebi344g00039 411 Gene3D - 265 349 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi344g00039 Sebi-Chr344 420422 424734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi344g00039 206 411 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 82.039 9.16e-106 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi344g00039 K02934 - gmx:100784101 351.673