Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi344g00018 ATGGAGGAGATTCAAGAGCCTCAGCCCCAATCATCACTCGGTCAAGAAGATGGAGATGAAGTGATCACTGAAAGTTCTGCATTTGTTAAAGGGGAACCGCCACAAGAATTTAGTATCCCCCCAAAAGTTGATTCTGAAGTTGAGGTCCTTCATGACAAAGTCACCAAACAAATAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTGTCAAAATCATGGTTGTGACCTAGATGAGAAGAAAGAAATGACTGGCTTGGGGATTGGTGTGGCCAGCATGAAAGCTGGGGAGCGGGCATTGCTGCGGGTGGGCTGGGAATTAGGATATGGAAAAGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTCGAGTTCATCGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAGAGGATTGGTGCTGCAGATCAGAGAAAGATGGATGGAAATACTTTGTTTCAGGAAAATAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAATTGTTTGGGAAGTATAGAGATATGGCTCTGGCGGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTAAATAAGCTGAACCGCTATGAAGAAGCTATAGGACAATGCAGCATTGTACTGAGTGAGGATGAGAATAATGTCAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCGGCACTTGGACAAATAGACGCTGCCAAGGAAGATTTCCAGAAAGCACGTAAGTATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTGAGGTTGCTTGCTGAACATGACAAGGCTGTTTATCAAAAGCAAAAGGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCGGTACCCAAGAGAAGGAATTTGCTAATACTTATTTGGCAGTGGTTGCTTTCACTATTTTATGGTCTTGTCTCGCTCTTCAAGCGTGAAAAGAACAAATCTGAGTAA 1047 0.4269 MEEIQEPQPQSSLGQEDGDEVITESSAFVKGEPPQEFSIPPKVDSEVEVLHDKVTKQIIKEGHGQKPSKYSTCFCQNHGCDLDEKKEMTGLGIGVASMKAGERALLRVGWELGYGKEGSFSFPNVPPMADLVYEVEFIGFDETKEGKARSDMTVEERIGAADQRKMDGNTLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLNKLNRYEEAIGQCSIVLSEDENNVKALFRRGKARAALGQIDAAKEDFQKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKRRNLLILIWQWLLSLFYGLVSLFKREKNKSE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi344g00018 348 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 82 141 IPR001179 GO:0003755
Sebi344g00018 348 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 79 138 IPR001179 GO:0003755
Sebi344g00018 348 MobiDBLite consensus disorder prediction 1 41 - -
Sebi344g00018 348 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Sebi344g00018 348 SUPERFAMILY TPR-like 152 303 IPR011990 GO:0005515
Sebi344g00018 348 SMART tpr_5 212 245 IPR019734 GO:0005515
Sebi344g00018 348 SMART tpr_5 246 279 IPR019734 GO:0005515
Sebi344g00018 348 SMART tpr_5 161 194 IPR019734 GO:0005515
Sebi344g00018 348 MobiDBLite consensus disorder prediction 1 19 - -
Sebi344g00018 348 Gene3D - 76 142 IPR046357 GO:0003755
Sebi344g00018 348 Gene3D Tetratricopeptide repeat domain 143 274 IPR011990 GO:0005515
Sebi344g00018 348 SUPERFAMILY FKBP-like 26 147 - -
Sebi344g00018 348 Pfam Tetratricopeptide repeat 247 279 IPR013105 -
Sebi344g00018 348 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 83 317 IPR039663 -
Sebi344g00018 348 FunFam Peptidylprolyl isomerase 146 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi344g00018 Sebi-Chr344 208965 212163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi344g00018 30 309 Calmodulin-binding Proteins AT3G25230 31.861 1.82e-32 125