Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi344g00006 ATGGACTTTGACGAGTACGAGTACTTGGAGAAGACAGTGGAGGAGCAGCAGCAGGAAGACAAAGATTCCTCGAAGAAGAAGAAGAGTGAGAGCACCGAAAAGAGCGAGAGGAGTTACCGGAAGCGCGACGTCGACGAAGATCTCGACGGCGAAGACAGGCGGAGTAAAAGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCCTAAAAGCAACAGAGAGAGATGTATATGAGTTCTTCTCAAAAGCTGGAAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGTTCTAAAGGAGTTGGCAATGCGATAATGATGAGGGATGGTGGGGATACCTTGCACTCATGTTTAATCAATTCATGCTGCGTACTCAAGATACATCATAGATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTACATCTCTTTGCTGTATTCTTTGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTTATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCCAATGCTACTGGTGGAGCTGCTGGTGCAACAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCAGTTGAGGTTGTCCAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCCGTAACAGATCATGTTGGGAGCCAGGATACAACTGCAAAATCTGCAGACTTGGATGATGATGAAGGTGGTTTGACTTTAAATGCCCACTCAAGAGCATTGCTTATGCAAAGGCTGGCTGGCTCTGACATTCCCACAAGCATTGGTGTGCCCGCTGTGAATGGGTCAGTTCCTGTTCAGCAGGCTTTTAGCTTGCCTATTGGTAATCCAGGTATTATACCTGCGCCAGTTCTACCAACGCAAGTTGTGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCGAGCGAGTGTTTACTATTGAAGAATATGTTTGATCCAAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTCGACAAGAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGAGCAATGCACATGAGATGGTTTGCGCGCAGGTTAATTTCAGCTGTCTTCATGGTAATCTTCTAA 1458 0.4547 MDFDEYEYLEKTVEEQQQEDKDSSKKKKSESTEKSERSYRKRDVDEDLDGEDRRSKRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDGGDTLHSCLINSCCVLKIHHRSKETQLELSALEFLFPYISLLYSLYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATGGAAGATGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGSDIPTSIGVPAVNGSVPVQQAFSLPIGNPGIIPAPVLPTQVVPTPVVEPVGSPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHMRWFARRLISAVFMVIF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi344g00006 485 CDD RRM1_RBM39_like 78 202 - -
Sebi344g00006 485 Gene3D - 226 323 IPR012677 -
Sebi344g00006 485 SUPERFAMILY RNA-binding domain, RBD 230 308 IPR035979 GO:0003676
Sebi344g00006 485 SMART rrm1_1 78 141 IPR000504 GO:0003723
Sebi344g00006 485 SMART rrm1_1 232 305 IPR000504 GO:0003723
Sebi344g00006 485 SMART rrm1_1 402 479 IPR000504 GO:0003723
Sebi344g00006 485 SUPERFAMILY RNA-binding domain, RBD 397 481 IPR035979 GO:0003676
Sebi344g00006 485 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 52 483 IPR006509 GO:0003723|GO:0005634|GO:0006397
Sebi344g00006 485 CDD RRM3_RBM39_like 400 482 - -
Sebi344g00006 485 MobiDBLite consensus disorder prediction 10 76 - -
Sebi344g00006 485 Gene3D - 4 215 IPR012677 -
Sebi344g00006 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 121 IPR000504 GO:0003723
Sebi344g00006 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 477 IPR000504 GO:0003723
Sebi344g00006 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Sebi344g00006 485 SUPERFAMILY RNA-binding domain, RBD 54 121 IPR035979 GO:0003676
Sebi344g00006 485 FunFam Splicing factor CC1-like 215 320 - -
Sebi344g00006 485 Gene3D - 397 484 IPR012677 -
Sebi344g00006 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Sebi344g00006 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 121 IPR000504 GO:0003723
Sebi344g00006 485 CDD RRM2_RBM23_RBM39 233 310 - -
Sebi344g00006 485 MobiDBLite consensus disorder prediction 1 77 - -
Sebi344g00006 485 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 324 419 IPR029123 -
Sebi344g00006 485 NCBIfam splicing factor, CC1-like family 174 483 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi344g00006 Sebi-Chr344 60365 65540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi344g00006 203 304 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 4.39e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi344g00006 K13091 - gmx:100793461 620.542