Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi343g00001 ATGGCAGCAGTAATTGGGTTACTTGACATTCTCATATCTGATGATCGTCTCACAAATGAACAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCACTGCTCCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTAGTCCTAGAAGATGCGGAATTTGACTTAGGACGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAGATTATTTTAGACCTCTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCCGTGATAATGCAAATCTTCTTCTAGAGCAGAAGAAATCAGGCTGTTCACAAAAGAACAGAACGAAGCAACATGAAAATCAGGCAAAGAGGACTTCAAATAGTGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAACAGGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTAATGCGATTATACCTTCGTCTCAGTGCACCAGTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCAAACAATGGCTTAGTGGTACTGCTGGCACTACATGGCAACATGGGTCGATTAACCACATCTAAGTGGTTACATAAAAATGGGGTGATCACTATGGAGGCATCTGAATGGAATGGATTAACACAAATTCTGAGGGAACTCTTTCATGCAAGAAGTTCATCCCATAATAATAGCTTTGATGCACATTATCCAGTACATGGGGGTTTGAAGCCTAAATTACTGAGCATACAGGAATTGAAGAACCCAACATTTGTCATTGCTGTTGACATTGGGCTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTTCTTCACAAGTACCATGGAAGAGCAAAGTTTGTGTGGGTACTAAACCATGACTCCTCCAATACCATAAAGATGGAGCTTCGGAAGAAAGGACATATACTTACAGTCAACAAACCCCTTTACAAAACAAAGATGATTCATATTTTGGAAGCTGTCATAAAGGAGAGAAATGTTGAGCTACAAAAGAAAAATATGACTACTCCAAGAACCATAGTGAAAGAGGGTGATTTGCACGAGAGTCTTGAGATTGATTATACTCATTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCAGAAATAGGTGGTTCTAATCCTGTTAATGCTAGTGGAGATAAACAAAGAGAAGTGGTAGTTAGACCAAATCCATCATCACAATACCAGATAAATAACTGCTTAGTAGGATTAACTCATGAATATATGGAACATAATACTCCTGGGAAGGAAGGGTCATGTCAGAGCAGCCCCAACTCCAAGGATGTCACTGCAAATGCCACATCAAAATCATCATCTACTAAACTAGAAAACTTTCCAAGAGGAGATAGAGGTGAAGATTCTGAATGTGGTGAAACACGTAGGGCATGTAGCTCAAGTAGAGCAGTGCAAGCAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGATACTCCAGTAATTCAAAAGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTGGATGCACTAAATGGCATGCTTGGTGTTGAAAGAGAGTGTCTCCTAAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTAAGTTGCCCTCCATATGACTTGATCCTAATGGATTGCCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGAAATCAGGAGATCAGAAGTGGGAACTGGGTTACACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGATTTCAAATTGATGGAGTCCACCATTCTTTCACTCACAAGAAGGTCATCCTGA 2181 0.4044 MAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHSVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCRDNANLLLEQKKSGCSQKNRTKQHENQAKRTSNSDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPVDATEQHCQVDFANNGLVVLLALHGNMGRLTTSKWLHKNGVITMEASEWNGLTQILRELFHARSSSHNNSFDAHYPVHGGLKPKLLSIQELKNPTFVIAVDIGLLDLSTDIWKEQLNFLHKYHGRAKFVWVLNHDSSNTIKMELRKKGHILTVNKPLYKTKMIHILEAVIKERNVELQKKNMTTPRTIVKEGDLHESLEIDYTHCDVASSDGSDISEIGGSNPVNASGDKQREVVVRPNPSSQYQINNCLVGLTHEYMEHNTPGKEGSCQSSPNSKDVTANATSKSSSTKLENFPRGDRGEDSECGETRRACSSSRAVQAKKSLEGLRILLAEDTPVIQKVATIMLEKMGATVVAVGDGQQAVDALNGMLGVERECLLKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYEATKEIRRSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRSS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi343g00001 726 SUPERFAMILY CheY-like 576 724 IPR011006 -
Sebi343g00001 726 CDD HisKA 1 47 IPR003661 GO:0000155|GO:0007165
Sebi343g00001 726 Gene3D - 558 721 - -
Sebi343g00001 726 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 98 248 IPR003594 -
Sebi343g00001 726 Gene3D - 53 251 IPR036890 -
Sebi343g00001 726 ProSiteProfiles Response regulatory domain profile. 579 722 IPR001789 GO:0000160
Sebi343g00001 726 ProSiteProfiles Histidine kinase domain profile. 1 250 IPR005467 -
Sebi343g00001 726 MobiDBLite consensus disorder prediction 543 559 - -
Sebi343g00001 726 SMART REC_2 578 718 IPR001789 GO:0000160
Sebi343g00001 726 MobiDBLite consensus disorder prediction 515 542 - -
Sebi343g00001 726 PRINTS Bacterial sensor protein C-terminal signature 193 203 IPR004358 GO:0016310|GO:0016772
Sebi343g00001 726 PRINTS Bacterial sensor protein C-terminal signature 210 228 IPR004358 GO:0016310|GO:0016772
Sebi343g00001 726 PRINTS Bacterial sensor protein C-terminal signature 175 189 IPR004358 GO:0016310|GO:0016772
Sebi343g00001 726 PRINTS Bacterial sensor protein C-terminal signature 234 247 IPR004358 GO:0016310|GO:0016772
Sebi343g00001 726 Gene3D - 1 52 - -
Sebi343g00001 726 MobiDBLite consensus disorder prediction 512 559 - -
Sebi343g00001 726 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 40 247 IPR036890 -
Sebi343g00001 726 PANTHER HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J 1 722 - -
Sebi343g00001 726 CDD REC_hyHK_CKI1_RcsC-like 580 718 - -
Sebi343g00001 726 FunFam Ethylene receptor 1 51 253 - -
Sebi343g00001 726 SMART HKATPase_4 98 250 IPR003594 -
Sebi343g00001 726 Pfam Response regulator receiver domain 580 715 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi343g00001 Sebi-Chr343 34099 37848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi343g00001 1 726 Histidine Kinase Gene Family AT2G17820 59.918 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi343g00001 HATPase_c 1.1e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi343g00001 - - gmx:100801970 1224.54