Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi342g00031 ATGCCTCTACCAACAGCTTGCCCAATGGAATTTGCTACCATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTCGTGCTGGAAGAGTTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGACTTTATCAAAAACCCATATCTGAGAGCAAAGATGGTTGAAGTCTTGAATTGCTGGATGCCCCGTAGGAGCGGCTCATCTGCTACAGCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGTCACAATATTGCCGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCACCGTAATGCCTGGAGACAGAGGAGGAAAGGGTGTCTATCTGAATTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTGAAAGAATTGGAGGCTGAGATGTCAAATAAAGTTGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGAGAGGACCCGGTTATTCCATTCTCAAGAAAATGTCTATTATTCGGATAGATATGAAATTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTTAATTACTTTCTGCTGCAATTGGTGGGTCCCCAGAGAAAATCACTTAGTCTGAAAGATCCTGAGAAGTATGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGTGACAAGAATTCCATCTTCCCAGCTGCCATCTCCAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCTGCGGAGGTCCTTCATAGAATTGGTGAGGATGGGAGAATTATACAAGAATTTGTTCAACTTGGTGCTAAAGCAAAAGTTGCTGCTTCAGAGGCCATGGATACTGAAGCTATTTTAGGAGAAATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCATCAAGAATTACAGTTGATCGTCCTGTCATCCAGAGGCATCTTCTTAGTGATAGTACTGATCCATTCAACCGTTCTCATCTCACTGTGGATATGGATTCCTGA 1251 0.4165 MPLPTACPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLEEFMNFIIMFMASPDFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQRRKGCLSEFLNFLINDSIYLLDESLNKILELKELEAEMSNKVEWERRPVQERQRGPGYSILKKMSIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDKNSIFPAAISKDGRSYNDQLFSAAAEVLHRIGEDGRIIQEFVQLGAKAKVAASEAMDTEAILGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTVDMDS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi342g00031 416 Coils Coil 168 188 - -
Sebi342g00031 416 Pfam Ubiquitin elongating factor core 1 345 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Sebi342g00031 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 415 IPR013083 -
Sebi342g00031 416 FunFam Ubiquitin conjugation factor e4 a 361 415 - -
Sebi342g00031 416 Pfam U-box domain 362 414 IPR003613 GO:0004842|GO:0016567
Sebi342g00031 416 PANTHER UBIQUITINATION FACTOR E4 1 414 IPR045132 GO:0000151|GO:0030433|GO:0034450
Sebi342g00031 416 SUPERFAMILY RING/U-box 354 413 - -
Sebi342g00031 416 ProSiteProfiles U-box domain profile. 361 416 IPR003613 GO:0004842|GO:0016567
Sebi342g00031 416 SMART Ubox_2 365 416 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi342g00031 1 414 U-box Gene Family AT5G15400 80.430 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi342g00031 K10597 - gmx:100811444 751.125