Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi342g00020 ATGGATGGATCAACTGGCCGTGGTGGTGGAAGTGTAGACATGTTTCTACGAAATTATAAGTTGGGAAAAACTCTGGGAATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATAAAGATCCTCAACCGCCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATCATACGACTTTATGAGGTCGTAGAAACCCCAACAGACATATATATGGTGATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAAAAGGGTAGGTTGCAAGAAGACGAGGCCCGCAATTTTTTTCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTGGCTCACAGAGACCTGAAGCCTGAGAATTTGCTTTTGGACTCAAAATGCAGTGTCAAGATTGCGGATTTTGGCTTGAGCAACATCATGCGTGATGGTTATCTCTGGGAAATTGTATGCTGGACCTGA 540 0.4185 MDGSTGRGGGSVDMFLRNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVVETPTDIYMVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVAHRDLKPENLLLDSKCSVKIADFGLSNIMRDGYLWEIVCWT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi342g00020 179 Coils Coil 179 179 - -
Sebi342g00020 179 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Sebi342g00020 179 FunFam Maternal embryonic leucine zipper kinase 10 176 - -
Sebi342g00020 179 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 17 177 - -
Sebi342g00020 179 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Sebi342g00020 179 Pfam Protein kinase domain 19 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi342g00020 179 SMART serkin_6 19 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi342g00020 179 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Sebi342g00020 179 ProSiteProfiles Protein kinase domain profile. 19 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi342g00020 179 Gene3D Transferase(Phosphotransferase) domain 1 10 178 - -
Sebi342g00020 179 SUPERFAMILY Protein kinase-like (PK-like) 16 178 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi342g00020 Sebi-Chr342 402227 407766 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi342g00020 19 179 CBL-interacting serine-threonine protein kinases AT4G24400 51.235 2.93e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Sebi342g00020 Pkinase 9.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi342g00020 K07198 - dcr:108196720 331.257