Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi342g00018 ATGAATGGATCAACTGGCCGTAGTGATGGTGATGAAAGTGTGGACATGTTTCTACAGAATTATAAGTTAAGAAAAACACTTGGAGTTGGGGCCTTTGGTAGGTTGATACTTGCAGAGCATGTATTGAATGGGGATAAAGTTGCCATAAAGATCTTTCACCGCCGCAAGATGGAGAACATGAAAATGGAAGAACAAGAATCTGGAGAGCTCTTTGACTATGTAGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCACGCAAGTTTTTTCAGCAGATCATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCTTGAGAATTTGTTATTGGACTCAAAATACAATGTCAAGATCGCTGGTTTTGGCTTAAGCAATATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCTGCCTATGCAGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGGGCTGTGGTGTAATTTTATACTCTCTGCTCTGTGGCACCCTTCCTTTTGATGACGAAAACATTCCCAACCTCTTCAAAAATATCAAGGGAGGGATATACATTCTTCCTAGTCATCTATCACATGGTGCTAGAGATTTGATATCAAGGATGCTTGTGGTGGATCCTATGAAGAGGATGACCATACCTGAGATACGCCAACACACATGGTTCCAAGTTTCTCTGCCGCGTTATTTAGCATTGCCACCGCCAGATCATATAATGCAACTAACTAAAAAGCTGTATGTTTTTGTCCATATTATGGATTAA 807 0.4164 MNGSTGRSDGDESVDMFLQNYKLRKTLGVGAFGRLILAEHVLNGDKVAIKIFHRRKMENMKMEEQESGELFDYVVEKGRLQEDEARKFFQQIISGVEYCHRNMVVHRDLKLENLLLDSKYNVKIAGFGLSNIMRDGHFLKTSCGSPAYAAPEVISGKLYAGPEVDVWGCGVILYSLLCGTLPFDDENIPNLFKNIKGGIYILPSHLSHGARDLISRMLVVDPMKRMTIPEIRQHTWFQVSLPRYLALPPPDHIMQLTKKLYVFVHIMD 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi342g00018 268 ProSiteProfiles Protein kinase domain profile. 21 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi342g00018 268 FunFam Non-specific serine/threonine protein kinase 66 249 - -
Sebi342g00018 268 SUPERFAMILY Protein kinase-like (PK-like) 17 251 IPR011009 -
Sebi342g00018 268 Gene3D Transferase(Phosphotransferase) domain 1 11 261 - -
Sebi342g00018 268 Pfam Protein kinase domain 60 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi342g00018 268 SMART serkin_6 21 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi342g00018 268 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 61 239 - -
Sebi342g00018 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Sebi342g00018 268 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi342g00018 Sebi-Chr342 384401 386375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi342g00018 21 237 CBL-interacting serine-threonine protein kinases AT4G24400 42.520 1.98e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Sebi342g00018 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi342g00018 K07198 - gmx:547544 415.231