Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi341g00024 ATGGGGAATCTTCTTGTGAAGGATTTTGACATACAAAAGGAAGCTGGGGGCTTCTCTTACAGAGCTGTCCAAAAGCAATTTAGGATTGAGGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAGGGAGTTGCTGCATACCAACTCAAGATTCCATACCTACGCTCAGTAACAACGCCCCAAGCAGTGAAAATAATAAAACTGAGAAGAAAACACAATGATGATGATGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCGGCTATTCTGAGTTAAGGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACTTGTTTATAAGGACCTGGCTCTGCCACTGCTAGCTTGTAGTTCTATTGTTTTGTCGAAAGTGGGGACACTCAATGATGGAAGAGTTGTTGCTGTTAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCTACTATATCTGTAGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATAAAGCATATTTGGAAATGTTTTATTTCTCAATTGGTCCACACGCTATGATATATGCTTGGGTGTTGCAAGGGGTTTTAACATATTTGCATGAGGAGTCACGACTTCGTATTGTACATCGTGATGTGAAGGCTAGTAATATTCTGCTTGATTATAATCTTGTCCCCAAAATATCTGATTTTGGGTTAGCTAAATTATATGATGAAAAAATGACCCATATAAGCACCCGTGTGGCTGGGACAATTGGATATCTAGCACCGGAGTTTGCCATGCGCGGACGCCTTACAGAGAAAGCAGATGTTTTTTCCTTTGGTGTTGTGGCTCTAGAGTTAGTTAGTGGAAGGGCAAATTCTGGTTCAAGTTTGGAAGGAGAGAAGACATTTCTTCTAGAATGGCCCCTTGGACCGTCTCCAGATCCTAGACTATCAGAATTCAAGGAGGAAGAAGTAAAACGCATCGTGGGAATAGCGCTTTTGTGCACTCAAGCATCACCAACTTTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATTGTGAAGTGAGCACTGTAACTTCGAGGCCTGGATACTTGACTGACTTTATTTTTGATGATCTGACCAGCATGATGTCTGACATTACAATTAGAGGATCGGATTCAAGTAATTACAATTCATCAGCAAGTACCAACATAGTTGGGGGTGCAGACCATTCACCAATAAGTCCTTCTAAACCATCCTTCATTAGACTCTGGGCGTGTATAGGTAAGAATAGTGTTGCTTGA 1377 0.4074 MGNLLVKDFDIQKEAGGFSYRAVQKQFRIEVKENYLEIHLFWAGKGVAAYQLKIPYLRSVTTPQAVKIIKLRRKHNDDDEELLGIDTKPYTFGYSELRNATNDFNLDNKLGEGGFGLVYKDLALPLLACSSIVLSKVGTLNDGRVVAVKQLSVGSHQGKSQFIAEIATISVVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDKAYLEMFYFSIGPHAMIYAWVLQGVLTYLHEESRLRIVHRDVKASNILLDYNLVPKISDFGLAKLYDEKMTHISTRVAGTIGYLAPEFAMRGRLTEKADVFSFGVVALELVSGRANSGSSLEGEKTFLLEWPLGPSPDPRLSEFKEEEVKRIVGIALLCTQASPTLRPSMSRVVAMLSGDCEVSTVTSRPGYLTDFIFDDLTSMMSDITIRGSDSSNYNSSASTNIVGGADHSPISPSKPSFIRLWACIGKNSVA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi341g00024 458 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 407 - -
Sebi341g00024 458 Pfam Protein kinase domain 139 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi341g00024 458 SMART serkin_6 104 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi341g00024 458 Gene3D Phosphorylase Kinase; domain 1 56 196 - -
Sebi341g00024 458 Gene3D Transferase(Phosphotransferase) domain 1 216 391 - -
Sebi341g00024 458 ProSiteProfiles Protein kinase domain profile. 104 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi341g00024 458 Pfam Malectin domain 2 47 IPR021720 -
Sebi341g00024 458 FunFam Leucine-rich repeat receptor-like protein kinase 73 196 - -
Sebi341g00024 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Sebi341g00024 458 FunFam Lectin-domain containing receptor kinase A4.3 197 397 - -
Sebi341g00024 458 SUPERFAMILY Protein kinase-like (PK-like) 81 430 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi341g00024 Sebi-Chr341 709414 715384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi341g00024 2 443 Receptor kinase-like Gene Family AT1G56120 52.918 1.06e-156 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi341g00024 Pkinase 7.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi341g00024 - - lja:Lj3g3v0397040.2 563.533