Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi341g00022 ATGACATGCAGGAACTTTGTTGCCAACAACTTGACAATAGAAGGTTCAAATAGCAGTGGTTTGCCAACTGGGCTCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGGAAGATATTTTGACTTTGCAATAAAATGCGGTGGTCCCCAAATTACATCCACAGATAGAATTGTGTATCAAAGGGACAATGAGTCACTTGGTCCTGCTACATACTTTGTTACTGATACAAATAGATGGGCCGTTAGTAATGTCGGATTATTTACTAACGTCAACAACCCTGAATATAAAAGTTTTGTATCTAATCAGTTCACTGGTACTGTGAACTCGGAGCTCTTCCAAACAGCTCGGCTCTCTGCATCATCATTAAGATATTATGGTCTGGGGCTGGAAAATGGATTTTACAACATCACCCTCCAATTTGCAGAAACATCTATTCTGGATTCTGCCACATGGAAAAGCCTTGGGAGACGGGTGTTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTCGACATACAAAAGGAAGCCGGGGGTGTCTCTTACAGAGCTGTCCAAAAGCAATTTAGGTTTGAAGTAAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAGGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTATCCCAGATTTCATACCTACTGTCAGTAATGAACCTCCAAGCAGTGAAAAGAATAGAACTGGGCTGATTGTTGGAATCGTTGTTGGTGTTGGAGTTGTAGCCTTTCTATCAGTTTTTTCCATTTTCTATTTCATTCAGAGAAGAAAACGCCTTGAGGATGAGGAAGAACTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTCTGAGCTAAAGAATGCTACAAATGATTTCAATATGGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAGCTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATAGCTACTATATCTGCTGTGCAACATCGTAATCTTGTCAAATTGTATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTACGAATATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATATTTTATTTCTCAATTGGTCCACACGCTATGATATCTGCATGGGTGTTGCAAGAGGTTTAACTTATTTACATGAGGAGTCACGGCTCCGTGTTGTACACCGTGATGTGAAGGCTAGTAATATTCTGCTTGATTATGAGCTTGTTCCAAAAATATCTGATTTTGGTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTTTTTTCCTTTGGCGTTGTAGCTCTAGAGTTAGTTAGTGGAAGGCCAAATTCTGATTCAACTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGAAGCTTCACGAAAACAACTGCATAACTGAACTTGTAGATCCCAGACTAACAGAGTTCAACAAGGAAGAAGTAAACCGCATTGTGGGAATAGCACTTTTATGCACTCAGACATCACCAACTTTACGGCCATCAATGTCACGTGTTGTGGCAATGCTTTCAGGAGACGTTGAAGTGAGCACTGTAACTTCAAGGCCTGGATACCTGACTGACTGGAAATTTGATGATGTGAGCAGCATAATGACCGACGTTGCAATGAAAGATACAAGTTACTACAATTCATCTGCAAGTACCAGCATAGTTGGTGGTACATACAATTCACCAATAGATCCTTCTAAATCCATCCTTAATGAGACTCTGAGGGAGGGTAGGTAA 1884 0.4066 MTCRNFVANNLTIEGSNSSGLPTGLNCLQKNFPCNRGAGRYFDFAIKCGGPQITSTDRIVYQRDNESLGPATYFVTDTNRWAVSNVGLFTNVNNPEYKSFVSNQFTGTVNSELFQTARLSASSLRYYGLGLENGFYNITLQFAETSILDSATWKSLGRRVFDIYIQGTRVLKDFDIQKEAGGVSYRAVQKQFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISAIPDFIPTVSNEPPSSEKNRTGLIVGIVVGVGVVAFLSVFSIFYFIQRRKRLEDEEELLGIDTKPYTFSYSELKNATNDFNMENKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNILFLNWSTRYDICMGVARGLTYLHEESRLRVVHRDVKASNILLDYELVPKISDFGGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSTLEGEKMYLLEWAWKLHENNCITELVDPRLTEFNKEEVNRIVGIALLCTQTSPTLRPSMSRVVAMLSGDVEVSTVTSRPGYLTDWKFDDVSSIMTDVAMKDTSYYNSSASTSIVGGTYNSPIDPSKSILNETLREGR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi341g00022 627 Gene3D Phosphorylase Kinase; domain 1 272 384 - -
Sebi341g00022 627 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 589 - -
Sebi341g00022 627 SUPERFAMILY Protein kinase-like (PK-like) 292 578 IPR011009 -
Sebi341g00022 627 Pfam Protein kinase domain 310 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi341g00022 627 Pfam Protein tyrosine and serine/threonine kinase 454 556 IPR001245 GO:0004672|GO:0006468
Sebi341g00022 627 FunFam Leucine-rich repeat receptor-like protein kinase 41 232 - -
Sebi341g00022 627 CDD STKc_IRAK 315 556 - -
Sebi341g00022 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Sebi341g00022 627 Pfam Malectin domain 44 228 IPR021720 -
Sebi341g00022 627 FunFam Os07g0541700 protein 385 467 - -
Sebi341g00022 627 Gene3D Transferase(Phosphotransferase) domain 1 385 567 - -
Sebi341g00022 627 FunFam Leucine-rich repeat receptor-like protein kinase 278 384 - -
Sebi341g00022 627 ProSiteProfiles Protein kinase domain profile. 309 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi341g00022 627 SMART serkin_6 309 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi341g00022 627 Gene3D - 42 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi341g00022 Sebi-Chr341 624291 632384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi341g00022 5 627 Receptor kinase-like Gene Family AT1G56120 60.896 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Sebi341g00022 Malectin 9.4e-44 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi341g00022 - - lja:Lj3g3v0397040.2 1051.97