Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi340g00029 ATGGTCTTGGTGGATTATGAGGGTGGTGGAATCCAAGCCAGTATTAGAAAAGCAATGATGAAAAAAATTTCCAACTGTGTAACTGAAGGTTTTGTGTATAAGATGACTTATTTTACAGTTATTGCCAATGGTGGTACTTATAGGGCTACTACACATGAATTTAAGCTTTTGTTTCAACCTAGAACTAAGGTTGTTCCTGCTGAGAGTGAGATTATACCAAGGTTTGGTTTGGATGTTAAGAGCTCAAAAGACATTCAAGATACAAATGGCAAATCTGACTATTTGTTTGATTTCACAGGCCTATTAACCGGTGTTAGTGAAGACAAGCTTTATGAAAGGAATGACAAAACTACTAGAGTTCTTGAGTTGGAGTTAACGGAAGACAAGGGTGTTGTCAAGTGTTCTTTGTATGGACATTTTATTGATACGATGAAGGGATTCATGCTCACTAATGCTGATGAGCTTTCTGTAGTGGTTATTCAATTTGCAAAGGTCAAGCGCTACATGGGTAAGGTCTCTTTATACACTGTTGGCAATTCCACCCGGCTGTTGTGGAACCCAGAGATTCCAGAAGTTCGAGACTTTAAGAATAGCATTGCTTGCCATGGTATAGACATGCATGGACCCCTTAGAATGATTGGTGACCTATCATTTTCCATGACGGATGAGTTTCTCTCCTATTTTACTAGGAAGACTGAGGGGAACTTTATTTTCCTCGCAACTGTTGATGCTATTGTCAAATATAGCTTTTGGTGGTGTTCATGTAAATGCTATAAATATGTCAAGCTAGATGAAGGGACAAACACTTATTATTGTACAGGCTGTAAAACACATGTGTCTGAAGTTATACCTAGGTACAAGTTGAAATTGGAAGTCAATGATGGCATTGAAAAGGCAAACTTTGTCCTGTCAAGAAACCATCTCATGAATATCCAGGAGTTAAACAAGCTTATAGGCAATGGATATCTGATCAAAGTTGAGGTCAAGGATGATAGGGCCTTTAGATTTGATGACTCCTTTAAAGTTAAAAGGGTTTGTCAAGATAAGGAGATTATTAGGGGGTTCAAGGATGATGCCTTAATTAAAACCCCTGAAATGTTTAAACTTAAGGAACCAGTGGTTCAAGATTTAGATGATGGGGTCCTTGGTGGAGAAAGTGAAAATGTTGATAAATGTGCTGGCCTGGCCGAGCTTTACAATGATCATGAGTTCAGATCAAGTTCTCTTGGGGAGTCTTCCAATGCTTCTGCCTGTTTGCCTCCACAAAAGAGGAAGAATCAATCACGTGCCACTGCTCTTGCTCTGTCTAAGAAGAGGGGAATTCCAAAGACTATCAAGATTGAAAAGGATTAG 1353 0.3902 MVLVDYEGGGIQASIRKAMMKKISNCVTEGFVYKMTYFTVIANGGTYRATTHEFKLLFQPRTKVVPAESEIIPRFGLDVKSSKDIQDTNGKSDYLFDFTGLLTGVSEDKLYERNDKTTRVLELELTEDKGVVKCSLYGHFIDTMKGFMLTNADELSVVVIQFAKVKRYMGKVSLYTVGNSTRLLWNPEIPEVRDFKNSIACHGIDMHGPLRMIGDLSFSMTDEFLSYFTRKTEGNFIFLATVDAIVKYSFWWCSCKCYKYVKLDEGTNTYYCTGCKTHVSEVIPRYKLKLEVNDGIEKANFVLSRNHLMNIQELNKLIGNGYLIKVEVKDDRAFRFDDSFKVKRVCQDKEIIRGFKDDALIKTPEMFKLKEPVVQDLDDGVLGGESENVDKCAGLAELYNDHEFRSSSLGESSNASACLPPQKRKNQSRATALALSKKRGIPKTIKIEKD 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi340g00029 450 Gene3D - 220 351 IPR012340 -
Sebi340g00029 450 Gene3D - 72 205 IPR012340 -
Sebi340g00029 450 SUPERFAMILY Nucleic acid-binding proteins 81 205 IPR012340 -
Sebi340g00029 450 CDD RPA1_DBD_A_like 1 64 - -
Sebi340g00029 450 Pfam Domain of unknown function DUF223 1 68 IPR003871 -
Sebi340g00029 450 SUPERFAMILY Nucleic acid-binding proteins 229 343 IPR012340 -
Sebi340g00029 450 MobiDBLite consensus disorder prediction 409 433 - -
Sebi340g00029 450 CDD RPA1_DBD_B_like 100 196 - -
Sebi340g00029 450 Gene3D - 1 69 IPR012340 -
Sebi340g00029 450 SUPERFAMILY Nucleic acid-binding proteins 1 68 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi340g00029 Sebi-Chr340 1056605 1059123 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi340g00029 3 295 Core DNA Replication Machinery Family AT5G61000 24.169 1.03e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi340g00029 - - lja:Lj1g3v3385890.1 306.99