Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi340g00004 ATGGGGAATCAAGCAGGAAAGGATGCCTGCACAACTGAGTATTCAACAAGTGGAGCTGGACATATGGACCATTCAACAAATGGAGCTGGACATATGGACCAGGTGTCTAAAACTGATGCAAAGTTGGCAATAATCAACACCAAAGTCCAAGGACAAAGATGCCCTCAAATCCTGATCCCGCAACTCACTCATCAGTCATCACCAGGACTGCCAACAGGAACTACAAAGGGAATGTCTACCAATACAAAGACTGCCAATCAAGGCACAGGGAGTGGCACTAGCTCCCGCAGTGAGAATTTAGAGAGCACCAGTGCACCCATTAGGCCACATACTGGTGGTGATGTAAGGTGGGATGCAATTAACATGGTTTCCAAGAGTGGCCCCCTCAATCTTAGCCATTTCAGGCTTCTCAAACGCATTGGTTATGGAGACATTGGAATGGGGGTGATCTTCATTCTCTTCGACAATAGCAACCAAACAAGTGTTTCACTGAAGAAGCTGCAAGAGGTTTTGTTGGCTCTTGAGTACCTGCACAAGCATGGCAGTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAAAGATGAAGGGCATATCATGCTCTCAGATTTTGATTTATCACTTCACTGCTCTGTCAGTCCTACATTAGTCAAGTCTTCACCTACCAATGAAGGCAATGGTGGTGGTGGTGATTCTGGGGGTATGTTGGGTGATGACCAAGCAGTGCAAGGCAATACTCAACCATCAGGCTTTTTCCCTCACATTTTGCCTTCAAAGAACAGAAAGGAAAAATCATATTTTGGCCTATTGCCATTGAGATTCCCAGAAACTCCCCAAATCAGTGCAACAGCTCGTGATCTTATAAAAGGATTGTTGGTGAAAGAACCTCAGAAGAGAACTGGATATAAAAGAGGTGCTACAGAAATAAAACAACACCTATTTTTTGAGGGAGTGAATTGGGCTCTAGTTAGGACTTAG 981 0.4434 MGNQAGKDACTTEYSTSGAGHMDHSTNGAGHMDQVSKTDAKLAIINTKVQGQRCPQILIPQLTHQSSPGLPTGTTKGMSTNTKTANQGTGSGTSSRSENLESTSAPIRPHTGGDVRWDAINMVSKSGPLNLSHFRLLKRIGYGDIGMGVIFILFDNSNQTSVSLKKLQEVLLALEYLHKHGSVYRDLKPENLLVKDEGHIMLSDFDLSLHCSVSPTLVKSSPTNEGNGGGGDSGGMLGDDQAVQGNTQPSGFFPHILPSKNRKEKSYFGLLPLRFPETPQISATARDLIKGLLVKEPQKRTGYKRGATEIKQHLFFEGVNWALVRT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi340g00004 326 Gene3D Transferase(Phosphotransferase) domain 1 273 324 - -
Sebi340g00004 326 PANTHER FLIPPASE KINASE 1-RELATED 272 325 - -
Sebi340g00004 326 MobiDBLite consensus disorder prediction 1 33 - -
Sebi340g00004 326 MobiDBLite consensus disorder prediction 240 254 - -
Sebi340g00004 326 MobiDBLite consensus disorder prediction 218 258 - -
Sebi340g00004 326 SMART serkin_6 83 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi340g00004 326 MobiDBLite consensus disorder prediction 59 106 - -
Sebi340g00004 326 Gene3D Transferase(Phosphotransferase) domain 1 167 209 - -
Sebi340g00004 326 Pfam Protein kinase domain 167 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi340g00004 326 MobiDBLite consensus disorder prediction 59 111 - -
Sebi340g00004 326 ProSiteProfiles Protein kinase domain profile. 21 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi340g00004 326 SUPERFAMILY Protein kinase-like (PK-like) 131 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi340g00004 Sebi-Chr340 106173 107975 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi340g00004 273 326 AGC Kinase Gene Family AT1G79250 81.481 2.86e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sebi340g00004 Pkinase 5.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi340g00004 - - gmx:100819001 154.066