Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi33g00058 ATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTAGTGGTGGGGTTCATGGAAGAGCCTCATGAAGCCTCAGCTTCTTCCAAGGAACTTGGCTTAGGCTTCAACACCACCTTATCAATTAGTTCAATCATCACTAGACAAAGAGATCCACAAGAAGAAGAAAAACCAAAGAAAGACAATAACCATGGAACTGAAGATCAACATGAAGCCACAAATGAATATCTTAATCCTCCTTCTTCTTCCAATAAGGCTAACAATAACCCTGTCCCACATCAGCTTGATCTTCTTCCTCAGCTCTCCTTCCCATGGCTTCCTACTGAAAACGGGAGTTTATCAAAGGGGTTGGACGTGAACGTGGTGCCGGCGGCGCCTCTGGTGGCGGAGGATGAGGCGCAGGAAGGGGCGGCGCTGTCATCATCCCCTAACAGCGCAGCATCTTCTTTTCAGATGGATCTCTGCATATACAGCAGAGGAGGTGGAGGGAGTTTGAGTGGTTCAGGAGGGAAGAGGGATTCTGATGGTGAGGCTTATGATCAAAGGGCTTCTTCAAGAGCAAGTGATGAAGATGAAAACGGTGGTGGTAGCACCAGGAAGAAGCTAAGGCTCTCCAAGGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAACACAATACTCTTAACCCTAAACAAAAACTTGCACTTGCAAAACAACTCAATCTTCGTCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACACTGACGGAAGAGAATAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTTTACATGCAATTACCAGCTACTACCTTGACCATGTGCCCTTCTTGTGAGCGTGTCGCCACTAATTCCACCTCCACTACTACTCCTAATGCCACCAGCAATGTTAATAATACCTCAGCCACTGCTAATAATGACTCCACTTCTAAAACCATTGGATTCCCCTTTGGAAAACCCAGATTTCATCCATTCGCTCACACCAGTCCACAACAGCATCTTGAATTGAATTAA 1107 0.4553 MELGLSLGDSSRPLVVGFMEEPHEASASSKELGLGFNTTLSISSIITRQRDPQEEEKPKKDNNHGTEDQHEATNEYLNPPSSSNKANNNPVPHQLDLLPQLSFPWLPTENGSLSKGLDVNVVPAAPLVAEDEAQEGAALSSSPNSAASSFQMDLCIYSRGGGGSLSGSGGKRDSDGEAYDQRASSRASDEDENGGGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTTTPNATSNVNNTSATANNDSTSKTIGFPFGKPRFHPFAHTSPQQHLELN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi33g00058 368 MobiDBLite consensus disorder prediction 162 203 - -
Sebi33g00058 368 MobiDBLite consensus disorder prediction 72 95 - -
Sebi33g00058 368 CDD homeodomain 199 256 IPR001356 GO:0003677
Sebi33g00058 368 MobiDBLite consensus disorder prediction 43 95 - -
Sebi33g00058 368 Coils Coil 268 291 - -
Sebi33g00058 368 ProSiteProfiles 'Homeobox' domain profile. 195 255 IPR001356 GO:0003677
Sebi33g00058 368 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 64 334 - -
Sebi33g00058 368 ProSitePatterns 'Homeobox' domain signature. 230 253 IPR017970 GO:0000981|GO:0006355
Sebi33g00058 368 Pfam Homeodomain 199 253 IPR001356 GO:0003677
Sebi33g00058 368 Gene3D - 203 253 - -
Sebi33g00058 368 MobiDBLite consensus disorder prediction 313 344 - -
Sebi33g00058 368 Pfam Homeobox associated leucine zipper 255 289 IPR003106 GO:0006355|GO:0043565
Sebi33g00058 368 SMART HOX_1 197 259 IPR001356 GO:0003677
Sebi33g00058 368 MobiDBLite consensus disorder prediction 173 203 - -
Sebi33g00058 368 FunFam Homeobox-leucine zipper protein 18 183 260 - -
Sebi33g00058 368 MobiDBLite consensus disorder prediction 313 368 - -
Sebi33g00058 368 MobiDBLite consensus disorder prediction 49 71 - -
Sebi33g00058 368 SMART halz 255 298 IPR003106 GO:0006355|GO:0043565
Sebi33g00058 368 SUPERFAMILY Homeodomain-like 184 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi33g00058 Sebi-Chr33 2780714 2782183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi33g00058 87 318 Homeobox Transcription Factor Family AT5G47370 57.025 4.05e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi33g00058 Homeodomain 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi33g00058 K09338 - gmx:100805312 445.277