Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi33g00030 | ATGGCAGAGAGATGCAGGATTGGGTATGAAGAGCAGAATCAGTGGTATTTATTTAGCCATAAAGATAAGAAGTCAAGAGGGACAAGAACTAACAGAGCTACAATGGTTGGGTTCAGGAAGGCAACAGGAAGAGGTAGGGCAATGTATGACAAGATGAAGCTAATTGGGATGAGGAAGACCCTTGTTTAA | 189 | 0.4233 | MAERCRIGYEEQNQWYLFSHKDKKSRGTRTNRATMVGFRKATGRGRAMYDKMKLIGMRKTLV | 62 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi33g00030 | 62 | Pfam | No apical meristem (NAM) protein | 11 | 62 | IPR003441 | GO:0003677|GO:0006355 | |
| Sebi33g00030 | 62 | SUPERFAMILY | NAC domain | 9 | 62 | IPR036093 | GO:0003677|GO:0006355 | |
| Sebi33g00030 | 62 | PANTHER | PROTEIN CUP-SHAPED COTYLEDON 2-RELATED | 12 | 62 | - | - | |
| Sebi33g00030 | 62 | Gene3D | NAC domain | 1 | 62 | IPR036093 | GO:0003677|GO:0006355 | |
| Sebi33g00030 | 62 | ProSiteProfiles | NAC domain profile. | 1 | 62 | IPR003441 | GO:0003677|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi33g00030 | Sebi-Chr33 | 1301520 | 1301708 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi33g00030 | 1 | 62 | NAC Transcription Factor Family | AT2G18060 | 77.778 | 2.14e-28 | 101 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi33g00030 | - | - | pvy:116133907 | 105.145 |