Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi33g00013 ATGGCTGCTCTGCACACTTCTCTGCTCTTACAACCCAATTTCCTTTCCCTAACTACCCCATCCACTCACACCGCGTCCAACTTGAGACTCACAACCACCCACTTACAACCCCTTCTCAAGTTGGTGCCTTCCCTCACCGTTGGAACTCCCACTACGACACGCCGTTCTCGTGCGGTGGCTGAACAAGCTACGGTTACCTCGTCCGACCCCAAATCCGAGGCTGCCAGGAGGCTCTACGTCGGCAACATTCCTCGCACTGTCACCAACGATGAGCTTGCAAGGATTGTGGAAGAGCATGGTGCTGTTGAGAAAGCAGAGGTTATGTATGATAAATACTCCGGAAGGAGCCGTCGTTTTGCATTTGTTACAATGAAAACTGTTGAGGATGCAAATGCAGCAATTGAGAAACTTAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTAAATATAACTGAAAAGCCTCTATCAACAGTAGATTTGAGTATACTCCAGGTCCAGGCTGAGGAATCGGAATATGTTGACGGCCCCCACAAGGTTTATGTGGGAAATTTGGCTAAGACAGTAACAACCGATACTCTTAAAAACTTTTTCTCTGAAAAGGGAAAAGTTCTTAGTGCCAAGGTACCTCAAAATCCAGTGGATGAGGATGTAGAAGCTGCAACATCATCTTTCAACAATGCTTTATTAGAAGGGCAGGAAATTCGTGTGAATAAGGCGTAG 723 0.4647 MAALHTSLLLQPNFLSLTTPSTHTASNLRLTTTHLQPLLKLVPSLTVGTPTTTRRSRAVAEQATVTSSDPKSEAARRLYVGNIPRTVTNDELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTQIGGREIKVNITEKPLSTVDLSILQVQAEESEYVDGPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVPQNPVDEDVEAATSSFNNALLEGQEIRVNKA 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi33g00013 240 SUPERFAMILY RNA-binding domain, RBD 172 240 IPR035979 GO:0003676
Sebi33g00013 240 CDD RRM1_PSRP2_like 77 156 - -
Sebi33g00013 240 PANTHER OS02G0815200 PROTEIN 50 239 - -
Sebi33g00013 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 148 IPR000504 GO:0003723
Sebi33g00013 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 212 IPR000504 GO:0003723
Sebi33g00013 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 240 IPR000504 GO:0003723
Sebi33g00013 240 SMART rrm1_1 77 150 IPR000504 GO:0003723
Sebi33g00013 240 SMART rrm1_1 179 238 IPR000504 GO:0003723
Sebi33g00013 240 SUPERFAMILY RNA-binding domain, RBD 66 154 IPR035979 GO:0003676
Sebi33g00013 240 Gene3D - 49 158 IPR012677 -
Sebi33g00013 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Sebi33g00013 240 Gene3D - 164 240 IPR012677 -
Sebi33g00013 240 FunFam 30S ribosomal protein 2, chloroplastic 55 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi33g00013 Sebi-Chr33 720083 723407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi33g00013 78 237 Eukaryotic Initiation Factors Gene Family AT1G71770 26.012 4.86e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi33g00013 K13126 - gmx:100811197 311.997