Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi33g00008 ATGGATTCACGTATTGGGCATCCACAACCACAACTACACTGTCAGCAGCATAATTCTGGACTAATGAGGTACCGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTGTTGACAACAACATTAATGAGGAAGGTTTCACAAATTTTCCATCCACAAGTTCAGAAATGTTGATATGGAGCAATTCGGAAGAGTATGGATATGGAGGCAAGCCTGTGAAGCAGGAAGCAGGGGAATCGGGAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCCTGCTGGTTTTTTCTCCAATGAAAATGCATTGAGAGGGGTAGGAAGCTTTAAAGCCGGTGATGTCTCAAATGGACAGGCTACTGGCACTGCATCATCTAGGCTATCCTCGTGCATGAAATGGATGCCCCAAATAGCTGAAAATGGAAACGAAAGCCTAGAAGCAAACAGAAACCTGGTCAATGACAATAGTAGCTCCAAATGTTACATGCCAATGCCATGCTTCACCAGTGAATTCTGGGAGAGTAGTAGTACTGCCCAAAAAACAGAAAGTGAAGATGAAATCATGTTTTCTGCTTCAAATGGTTTGGAATCTCAGGAAGCAGATTTTTCCTATCAAAATCCTGATTTGACTCGCCATTTGAGTCTGCCCAGCTCTTCTACTAAAATGGCATCCGTAGAGAAGTTCCTTCAAATTCAAGGATCTGTTCCTTGTAAAATTCGAGCAAAAAGAGGCTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGTGAGAAGAACACGGATTAGTGAAAGAATCAAGAAACTGCAAGGTCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGATCTGCAGGAACAAGTTAAGATACTCATAGATTGCAGGGAAAAATGCAAATGTACAAGTAATGAAAAGCAACACTCTAGACCTTTATCTTCACAAGAGGTGTCTATTGTCCCCGAGACTCCTCTAGAGGTGAACGTGGATAGTACGACCAACAAGGAGAATGTAGTAGAGGATAACGTGGTTGAGGATGGAGACCAGGGCTTTCAATGGGGGAGGTTCGGAGTGTTCTTCAGATATACTGAAGCTGGTGATGAAGAGATGGAGGAAAATCTTGAGGGGGATCATTCAGACCCTCTTTGTCCAATGGTTCAAATAACTCATAAGGAAGTTAGACAAGCTTGCCAAGCTTGGAAGTATTCGGTTATTATCAAGCTTCTGGGTGGTCCTTGGATGATATCTGGGCACTATCTGGTTGTCCAGAAATGGAAACCACAGTTCTTTCCCATGGAAGACGAGCTCAGACGTGTTGCAGTATGGGTTAGAGTGTCTAACTTTCCAATGGAGTTTTATGACAGATCTATTCTGTGGCGCATAGGTGATACTATTGGAAAAACTGTGAAAATTGACTCCAACACACTGAAACCTAGGGAGGGTTTTTTGGGCCAGACTACAACTGAGAGACGAAAGTTTTGTTGGACTTAA 1515 0.4304 MDSRIGHPQPQLHCQQHNSGLMRYRSAPSSLLASLVDNNINEEGFTNFPSTSSEMLIWSNSEEYGYGGKPVKQEAGESGIAPISLGKRVPPAGFFSNENALRGVGSFKAGDVSNGQATGTASSRLSSCMKWMPQIAENGNESLEANRNLVNDNSSSKCYMPMPCFTSEFWESSSTAQKTESEDEIMFSASNGLESQEADFSYQNPDLTRHLSLPSSSTKMASVEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVKILIDCREKCKCTSNEKQHSRPLSSQEVSIVPETPLEVNVDSTTNKENVVEDNVVEDGDQGFQWGRFGVFFRYTEAGDEEMEENLEGDHSDPLCPMVQITHKEVRQACQAWKYSVIIKLLGGPWMISGHYLVVQKWKPQFFPMEDELRRVAVWVRVSNFPMEFYDRSILWRIGDTIGKTVKIDSNTLKPREGFLGQTTTERRKFCWT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi33g00008 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 309 IPR036638 GO:0046983
Sebi33g00008 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 293 IPR011598 GO:0046983
Sebi33g00008 504 SMART finulus 249 299 IPR011598 GO:0046983
Sebi33g00008 504 CDD bHLH_AtbHLH_like 248 300 IPR045239 -
Sebi33g00008 504 Gene3D - 245 318 IPR036638 GO:0046983
Sebi33g00008 504 Pfam Helix-loop-helix DNA-binding domain 249 294 IPR011598 GO:0046983
Sebi33g00008 504 FunFam Transcription factor bHLH130 family 244 313 - -
Sebi33g00008 504 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 329 - -
Sebi33g00008 504 Pfam Domain of unknown function (DUF4283) 417 485 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi33g00008 Sebi-Chr33 529002 532418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi33g00008 173 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 57.554 5.18e-40 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi33g00008 DUF4283 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi33g00008 - - gmx:100785696 372.474