Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi33g00003 ATGAATTGTCTTAGGGTTTGCAAGTTCTACGCCCGTGGAGTATGTTTGAAAGGGGAGCAATGTGATTTTTCTCATCAGAGAAAGGATCCTTCAGTTGATATATGCACGTATTATCAAAAGGGATTTTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCGGCAGATGGATGCCAATCTCTGGTTTCTGATTCTGCTGTGGCTCATACTACCAAAAGAACATCAAGTTGGGTTCCAAAGGCTACAAAGTTGTCTTCATCTGACAAGAATGCAAGGAATTTGCAACGTAAGCATCTAAACTCTATGGGGAATGGTGATGTTGGTGAATCCAGTACTAGTAGCGCTGTACCATCTGAACATTTATTCTGTACATTTGCTGCTGCCAACTGCCCCTTAGGAGATAAATGTTCTCTAGTACATGGAAATCAATGTTTATACTGTAGAAAATATTGCTTGCATCCTACTGATCAAAAGGATAAAGAAAATCATTTGAGGACATGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAGAGGTAGTCAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTTCTTTCCAAACCCAAGCCATCTGAATGTAAGTTTGGGCTGCTTCCAGAATGTGATCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAGCCTCTGGAATGGACATCAATAATAATGCTAATACAGTGAGAACCTGCCCTGTTTGCCGGAAACTATCTTATTTTGTCATTCCAAGTGGTATTTGGTATTCTACAAAGGAGGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAATTGATTGATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTTGGGACTAGTTGTTTCTACAAGCATACAGTAAAGCCTGGCTCATACACATGGATACATAATAGGCCACCACCTCAACATAGACCAAACAATTTTGATATGTATGACATGTTGGATATGCTCAGCGAAGTTGATTTATCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGAATTTTTTGAAGATATGGATCCATTTGAGATGATGACTATATCAGATACCCTGGCTAGTGGATCAGGGCCTTGTTTGGGTCCTTTTGATTCTGATGATGAGGAGGACATGGATATTTTTCAGATGGCTGCTTTGTCAGAGGCACTGGTTTCAGGTGTGGATGATTTTGGCCCTGAAGATTTTCACGATGAAGAATTGAATCCTATGGAGGCGGCTTTGTTATCGATGATGATGCGTTCTAATATGGAAGAAGAAGACAGTGATGAAGACTACTAG 1350 0.4 MNCLRVCKFYARGVCLKGEQCDFSHQRKDPSVDICTYYQKGFCAYGSRCRYKHVRASQASSSADGCQSLVSDSAVAHTTKRTSSWVPKATKLSSSDKNARNLQRKHLNSMGNGDVGESSTSSAVPSEHLFCTFAAANCPLGDKCSLVHGNQCLYCRKYCLHPTDQKDKENHLRTCEKKEKYLQALRGSQEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPASGMDINNNANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGTSCFYKHTVKPGSYTWIHNRPPPQHRPNNFDMYDMLDMLSEVDLSSGEFYSIMRDSEFFEDMDPFEMMTISDTLASGSGPCLGPFDSDDEEDMDIFQMAALSEALVSGVDDFGPEDFHDEELNPMEAALLSMMMRSNMEEEDSDEDY 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi33g00003 449 ProSiteProfiles Zinc finger C3H1-type profile. 283 312 IPR000571 GO:0046872
Sebi33g00003 449 SMART c3hfinal6 126 150 IPR000571 GO:0046872
Sebi33g00003 449 SMART c3hfinal6 2 27 IPR000571 GO:0046872
Sebi33g00003 449 SMART c3hfinal6 283 311 IPR000571 GO:0046872
Sebi33g00003 449 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Sebi33g00003 449 SUPERFAMILY CCCH zinc finger 5 26 IPR036855 GO:0046872
Sebi33g00003 449 SMART ring_2 193 253 IPR001841 -
Sebi33g00003 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 54 IPR000571 GO:0046872
Sebi33g00003 449 CDD RING-HC_MKRN 191 254 - -
Sebi33g00003 449 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Sebi33g00003 449 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Sebi33g00003 449 Gene3D - 3 68 - -
Sebi33g00003 449 ProSiteProfiles Zinc finger RING-type profile. 193 254 IPR001841 -
Sebi33g00003 449 PANTHER MAKORIN-RELATED 7 338 IPR045072 GO:0000209|GO:0061630
Sebi33g00003 449 Pfam RNA-binding, Nab2-type zinc finger 288 309 - -
Sebi33g00003 449 Pfam RNA-binding, Nab2-type zinc finger 7 25 - -
Sebi33g00003 449 Pfam RNA-binding, Nab2-type zinc finger 131 148 - -
Sebi33g00003 449 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Sebi33g00003 449 SUPERFAMILY CCCH zinc finger 31 53 IPR036855 GO:0046872
Sebi33g00003 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 287 IPR013083 -
Sebi33g00003 449 Pfam Zinc finger, C3HC4 type (RING finger) 193 253 IPR018957 GO:0046872
Sebi33g00003 449 SUPERFAMILY RING/U-box 183 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi33g00003 Sebi-Chr33 350775 359046 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi33g00003 zf-C3HC4 5e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi33g00003 K15687 - gmx:100788886 757.288