Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi339g00059 ATGAGAGCTAAGAGTTTGACAAGTAAGAGGGAGTTTAGCATTAGAGGGAAATTGATAAAGATGATCAAATGTGTATGGTCGAGGGAACAGTTAAGTGTAGATGAAAGAAGTTATTCATCAGAGTCCCTGGCAACCAGGGATTATTCAGCAAGTGGTTATTCATCTCGTCCTGGTGACACCGATACAAAGTTGGACAATAGTAACATTGAAGAAGCAGAGTCATCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGTAATACCGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTTCTGCTGTAGTTCCCAAGATGAAAATTTCTATATCTAGAAGATGTGAACCCAATAAACGCCGTTCACAAAGTGATACAGTGCCTCCTATGTCAATGCATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTGCAGACTCTTGGAAGGTTTCAAGATGCTGCTCAATCATGCAAAGCTATTTTAGACACTGTTGAATCTGCATTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGACTGTAAATTACATGAGACTGTAACAAATGCTGTAGAACTGCTTCCTGAGTTGTGGAAGCTTGCTGGCTCTCCTCAAGATGTTATCTCATCATTTAGGAGGGCCTTGCTTTATAATTGGAATCTTGACAGTGAAGCCACTGCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTGTACAGTGGTTGTGAAGCAAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGAAAATCTGTTCTTGGAAGCATTGTTTGGGACCCTTCAATAATTGATCACCTTTCTTTTGCTGTAAGTGTCTCTGGGGAATTCATGACTCTGGCTCAACAGATAGAGGAGTTGCTTCCAGAAACCATGGAGAGTAAAGAGCGGTACTATACTCTAGCACTTTGTTACTGTGGGGAAGGTGAGCATATGATTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAACTTGGACTGCATACAAGAATTACTTCTAGCTTCCAAAATTTGTGCAGACAACATGGTTTGTGTTGAAGATGGAATCAAATATTCTTGCAAAGCCATTTCTCAGTTGTATGGAAAATGCATGCAAGTGGTAGCTATTGCAAATTGTTTACTAGGTGTTCTACTGTCAGCAAAATCCAGGTCAGTTGGTTCTGAATCAGAGAAGGCTTTGATGCAATCTGAAGCACTCAGTGCTCTAAAAGCTGCTGAGAGAATGATGAGGGAAAATGATCCATACATTGTCCTTCATCTTTGTCTAGAATATGCTGAGCAGAGGAAGTTGAGCATTGCTTTTTATCATGCAAAGAAACTGGTTAAGCTGGAGGGTGGATCTAGTATTACTGGATATATATTACTAGCTAAGATTTTATCAGCTCAAAAAAAGTTTGTTGATGCAGAGATTGTTATTGATGCTGCATTAGATCAAAGTGGAAAATGGGATCAAGGAGAACTGTTGAGAACTAAAGCTAAACTACGGATTGCACAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAGAATAAAAGTTTAGGCACTGCAAATAAGGTTGTGAAGTATAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTACACAGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTTGCAAAATCTCAAGCTATTAATCCCTACTCTGCTTCTAGATGGCATTCCACTGGTTTACTTTATGAAGCCAGAGGTCTTCATCAAGAAGCTCTGAAATCATTTAGAAAAGCATTGGATATTGACCCCAACCACGTGGCAAGTTTGATATCCACAGCCTGTATTCTCAGACAACTTGGTGGTCAATCATCTTCACTTGTTAGAAGCCTTCTCACTGATGCACTACGGCTTGACAGAACAAATCCATCTGCATGGTACAATCTTGGACTGCTCTACAAAGCTGATTTAGGGACATCAGCACTGGAAGCTATTGAATGCTTTGAGGCAGCGGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2196 0.3998 MRAKSLTSKREFSIRGKLIKMIKCVWSREQLSVDERSYSSESLATRDYSASGYSSRPGDTDTKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNTEAALHVFEGIDISAVVPKMKISISRRCEPNKRRSQSDTVPPMSMHAVSLLLEAVFLKAKSLQTLGRFQDAAQSCKAILDTVESALPEGWPENFVSDCKLHETVTNAVELLPELWKLAGSPQDVISSFRRALLYNWNLDSEATARIQKEFALFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLLLLILLRKSVLGSIVWDPSIIDHLSFAVSVSGEFMTLAQQIEELLPETMESKERYYTLALCYCGEGEHMIALDLLRNFLNNRENLDCIQELLLASKICADNMVCVEDGIKYSCKAISQLYGKCMQVVAIANCLLGVLLSAKSRSVGSESEKALMQSEALSALKAAERMMRENDPYIVLHLCLEYAEQRKLSIAFYHAKKLVKLEGGSSITGYILLAKILSAQKKFVDAEIVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTANKVVKYKGNRDRRLEMEIWHDLANVYTALSQWQDAEVCLAKSQAINPYSASRWHSTGLLYEARGLHQEALKSFRKALDIDPNHVASLISTACILRQLGGQSSSLVRSLLTDALRLDRTNPSAWYNLGLLYKADLGTSALEAIECFEAAVFLEESSPIEPFR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi339g00059 731 Pfam Tetratricopeptide repeat 623 653 IPR013105 -
Sebi339g00059 731 SUPERFAMILY TPR-like 531 701 IPR011990 GO:0005515
Sebi339g00059 731 Gene3D Tetratricopeptide repeat domain 569 728 IPR011990 GO:0005515
Sebi339g00059 731 SUPERFAMILY TPR-like 415 557 IPR011990 GO:0005515
Sebi339g00059 731 Gene3D Tetratricopeptide repeat domain 58 568 IPR011990 GO:0005515
Sebi339g00059 731 SMART tpr_5 494 527 IPR019734 GO:0005515
Sebi339g00059 731 SMART tpr_5 586 619 IPR019734 GO:0005515
Sebi339g00059 731 SMART tpr_5 620 653 IPR019734 GO:0005515
Sebi339g00059 731 SMART tpr_5 690 725 IPR019734 GO:0005515
Sebi339g00059 731 SMART tpr_5 152 185 IPR019734 GO:0005515
Sebi339g00059 731 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Sebi339g00059 731 MobiDBLite consensus disorder prediction 48 62 - -
Sebi339g00059 731 MobiDBLite consensus disorder prediction 48 67 - -
Sebi339g00059 731 ProSiteProfiles TPR repeat region circular profile. 620 653 - -
Sebi339g00059 731 PANTHER PROTEIN NPG1 22 731 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi339g00059 Sebi-Chr339 1070702 1074193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi339g00059 22 731 Calmodulin-binding Proteins AT4G28600 53.453 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi339g00059 K21843 - gmx:100789469 1240.33