Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi339g00043 ATGGCAAACAACTTCCTTAACTCCAGTCAGTTTTATTTTCTCAACTATGTACAACGCCTTCAGCATGACAATCTGAATGAAAATTTTGTATGCAGATTGTGTAACCAAGTTTTCACCACCTATCAATCAATCATAACCCATCTCGAGTCTCATCATATTCCTCGGGAAAACCTTCCCATAGGAATTCTAAACAATATCAACGCTCAGAGAGAATTGATTCCTAGCCCTTTGCAACCTATTTTTTCTAGACCAGCATTGTTGCCAGAAACTAGAAACTTTGTTAATAGCAGGGTTTTCCAGGCACCTCCACGACAACCTATGGTGATGCCTCGACCTAGAACAAACCCATCTCCTTATGCCAACCTGCAGGTTGCTGCTTCCCAACCACTCTTTCTTCCACCACAGGTTATGCCATCTAGTGGGAGGATTGGGACCGGCGTTACTGATATGGCCCACAAAGGGCGGATGGAAGTGTCTCCAATTGATGGAACTAAGCCATATATCGACCTGTTGGATAAACCCATTGATAACAATATGGTCGATAATTTGGCTAACATCAATGATGACACATTGGATTTGGCTTTAAGGCTCTAG 594 0.4259 MANNFLNSSQFYFLNYVQRLQHDNLNENFVCRLCNQVFTTYQSIITHLESHHIPRENLPIGILNNINAQRELIPSPLQPIFSRPALLPETRNFVNSRVFQAPPRQPMVMPRPRTNPSPYANLQVAASQPLFLPPQVMPSSGRIGTGVTDMAHKGRMEVSPIDGTKPYIDLLDKPIDNNMVDNLANINDDTLDLALRL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi339g00043 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Sebi339g00043 197 Pfam C2H2-type zinc finger 29 53 - -
Sebi339g00043 197 ProSitePatterns Zinc finger C2H2 type domain signature. 31 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi339g00043 Sebi-Chr339 781623 782216 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi339g00043 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi339g00043 - K09228 pvu:PHAVU_007G056300g 134.035