Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi339g00042 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAAATTGGGAGTGGATCGTTTGGAGAGCTTTACTTGGGTGTTAATATACAAAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACCGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGCTATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAACTCTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTCTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACTCATCTGGGTGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCATATCCATTGGAATTCACATCTTACTTCCACTACTGCCGGTCATTGCGGTTTGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTCAGGGACCTATTCATTCGAGAAGGCTATCAGTTTGACTACGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCTAGCTCCAGAGCTCGACCAAGTGGGAAACCAGCCATAAACCCAGGACCATCAGGGGAGAGAATAGAAAGGCCTTCAGGTGGACCAGAGATTCGGGATAGATTCTCAGGTTCAGGTGCAGTCGAAGCATTTGCAAGAAGGACTGGCACTGGGCTTGGTCTGCATGGTGATCATTCTAGGCATCGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGACCTCGGAGCTCTTCCCGAAATGGCAGTTCTTCAAAAAGGCCAGTTTTATCAAGCAGCCGACCGAGTTCTTCTGGTGAGCCTAGTGAAAACCGTTCCAGCCGAATGGTCTCAAGTAGTAGCCGACTATCTACAACTCAGAGAACTCAACCAGGTTTTGAGTCCAAAGCATCTTTTACTCGTGCTTCTGGGACAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCAATTGGTACAGGAAAAAGGAAATGA 1395 0.433 MDHVIGGKFKLGRKIGSGSFGELYLGVNIQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPAINPGPSGERIERPSGGPEIRDRFSGSGAVEAFARRTGTGLGLHGDHSRHRSSDDVPSSKDVQADSERPRSSSRNGSSSKRPVLSSSRPSSSGEPSENRSSRMVSSSSRLSTTQRTQPGFESKASFTRASGTRGGRDDTLRSFELLSIGTGKRK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi339g00042 464 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Sebi339g00042 464 CDD STKc_CK1_delta_epsilon 8 282 - -
Sebi339g00042 464 MobiDBLite consensus disorder prediction 349 464 - -
Sebi339g00042 464 FunFam Casein kinase 1-like protein 1 329 - -
Sebi339g00042 464 PANTHER CASEIN KINASE-RELATED 9 411 - -
Sebi339g00042 464 MobiDBLite consensus disorder prediction 300 334 - -
Sebi339g00042 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Sebi339g00042 464 MobiDBLite consensus disorder prediction 379 439 - -
Sebi339g00042 464 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi339g00042 464 MobiDBLite consensus disorder prediction 352 378 - -
Sebi339g00042 464 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Sebi339g00042 464 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
Sebi339g00042 464 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi339g00042 464 FunFam Putative Casein kinase I 1 85 - -
Sebi339g00042 464 SMART serkin_6 9 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi339g00042 Sebi-Chr339 732019 738158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi339g00042 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 1.03e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Sebi339g00042 Pkinase 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi339g00042 K08960 - cave:132177205 808.905