Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi339g00041 ATGCATTCTTCAAAACACAAGGAAACTGCAGGCACTGCAAAAGAAGGGTCAAAACCCCCATCAAATGAAGAAGCACCTTCAAATGTGACCAAACAGAAAGTTGCTGCTGCAAAGCAGTACATAGAAAACCATTATAAGAAGCAGATGAAGGACCTGCAGGAGAGAAAGGAACGACGTGATATGCTAGAAAAAAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAACAACTTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTCAAAGGCATAAGATGGGAGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTCCGCAGAGGCCAGGTTGAACATGTAAAGGCGGAAAGGAACCTACTTGCAGAAGTTGACAGCAATTGCATTGTGAAGCTTTATTATTCATTTCAAGATGAAGAGTATTTATATCTAATAATGGAGTATCTACCTGGTGGTGATATGATGACATTGCTCATGCGGAAGGATATACTGACAGAAGATGAGGCCAGATTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACACAACTATATTCACAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACTGGAAGCAACAGAAGTGGAGCCCTTCAGAGCAATGGACATCCTGTTCCTGTGGCTCCCAGAAGAACTCAGCAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCATATTCTACAGTTGGGACACCTGACTATATTGCCCCTGAAGTTCTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGCGATAATGTATGAAATGCTAGTGGGATATCCACCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCTAAACTATCTGCAGAGGCAAAGGATCTTATTAGTAGACTACTATGTAATGTAGAACAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTGGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTTAACTTTGTTGGCTACACGTATAAGAACTTTGAAATCGTGAATGATGATCAGCTACCTGGAATTGATGATGAATCGGCTACGGCTGCTAATCAACCTGTCCAAGGGAGCTTCTTAAAACTCTTACCAACTCAACCAGAAGTTCCTGAGAAGAGTGAATCGCAATGA 1545 0.4136 MHSSKHKETAGTAKEGSKPPSNEEAPSNVTKQKVAAAKQYIENHYKKQMKDLQERKERRDMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSTGSNRSGALQSNGHPVPVAPRRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTHLKFPEEAKLSAEAKDLISRLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTYKNFEIVNDDQLPGIDDESATAANQPVQGSFLKLLPTQPEVPEKSESQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi339g00041 514 CDD STKc_NDR_like 101 468 - -
Sebi339g00041 514 ProSiteProfiles Protein kinase domain profile. 103 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi339g00041 514 FunFam Non-specific serine/threonine protein kinase 74 186 - -
Sebi339g00041 514 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Sebi339g00041 514 SUPERFAMILY Protein kinase-like (PK-like) 77 457 IPR011009 -
Sebi339g00041 514 ProSiteProfiles AGC-kinase C-terminal domain profile. 405 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi339g00041 514 Gene3D Phosphorylase Kinase; domain 1 101 433 - -
Sebi339g00041 514 Gene3D Transferase(Phosphotransferase) domain 1 187 422 - -
Sebi339g00041 514 Pfam Protein kinase domain 105 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi339g00041 514 CDD MobB_NDR_LATS-like 37 98 - -
Sebi339g00041 514 Coils Coil 45 79 - -
Sebi339g00041 514 MobiDBLite consensus disorder prediction 1 42 - -
Sebi339g00041 514 FunFam Non-specific serine/threonine protein kinase 187 254 - -
Sebi339g00041 514 FunFam Non-specific serine/threonine protein kinase 303 422 - -
Sebi339g00041 514 SMART serkin_6 103 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi339g00041 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Sebi339g00041 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 456 - -
Sebi339g00041 514 MobiDBLite consensus disorder prediction 478 514 - -
Sebi339g00041 514 SMART pkinase_C_6 405 469 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi339g00041 514 Pfam Protein kinase C terminal domain 423 467 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi339g00041 Sebi-Chr339 719520 725626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi339g00041 9 512 AGC Kinase Gene Family AT3G23310 80.762 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Sebi339g00041 Pkinase 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi339g00041 K08790 - gmx:100783095 976.081